Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq512 201 2e-46 seq3654 163 4e-35 >seq512 Length=30657 Score = 201 bits (222), Expect = 2e-46 Identities = 380/558 (68%), Gaps = 6/558 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| | ||||| Sbjct 17448 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATCTC 17507 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | ||| | | || |||||| | || || || Sbjct 17508 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAACGACGATGAGCGCTACTTCATCTCC 17567 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| |||| ||| || ||||| |||||||| || || | || Sbjct 17568 CACGTTCTCGCTTTCTTCGCCGCCTCTGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 17627 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || ||||||| ||||| ||||| |||||||||||||| Sbjct 17628 TTCAGCAGTGAGGTCCAAATCCCAGAGGCCCGCTGCTTCTACGGTTTCCAAATCATGATC 17687 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG--- 125315 |||||| | ||| | || | ||||| || || |||| ||||| || | | Sbjct 17688 GAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAGGCT 17747 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 ||||| | | || ||||| || || ||||| || | || | || || |||||| Sbjct 17748 CAACGCACATAC---CTCTTCAATGCCATCGAGACTATTCCTTGCATTAAGAAGAAGGCT 17804 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | |||||||| | ||| | | ||| | | ||| | | || || || Sbjct 17805 GACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCTACCTTTGCCCAGCGTCTCGTTGCC 17864 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || |||||||| ||||| |||||||| || || || || |||| || ||||||||| Sbjct 17865 TTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCATCCATTTTCTGGCTCAAG 17924 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||| | || ||||| | |||||| | || || || |||||||| Sbjct 17925 AAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAGCTCATCTCCCGTGACGAGGGT 17984 Query 125556 CTACACTGTGACTTTGCC 125573 || ||| |||||| ||| Sbjct 17985 CTCCACACTGACTTCGCC 18002 >seq3654 Length=7047 Score = 163 bits (180), Expect = 4e-35 Identities = 338/498 (68%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 || |||||||| ||||| ||||| || || || |||||| | ||| ||||| | || | Sbjct 3488 CAAGATACGTTGACCAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCCATCTACGTCGAGC 3547 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 | ||||||||||| || ||||| || | || || | || ||| || || || | Sbjct 3548 CATGGCACGCGGATGTCTTTGAGTTCCTGGACTTGAGAAAGAACCACGGAAAGGAGGAAG 3607 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041 || ||| | |||||||| || || |||||| | || ||| | ||||||||||| ||| Sbjct 3608 TCCGTGCCCGTGACTTGTTCTACGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTCG 3667 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | | ||| |||||| || ||||||||| || | || ||| || | || || Sbjct 3668 AGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGTTTGGCGGACGTCT 3727 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGA 97160 ||||| ||||||||||| ||| | ||||||| | ||||| | || ||| Sbjct 3728 ACGGCGATGAGTTTGAGGCGCTCTACGAGAGCTACGAGAAGGAGGGTAAGGGTCGCAAGA 3787 Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | || | |||| || ||| | |||| | | ||||| ||||| |||| Sbjct 3788 CCA-TCAAGGC-CCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAA 3845 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| || ||||||||| || || ||||| |||||||| || | || || Sbjct 3846 CCCTTTCATGCTGTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTAC 3905 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 |||| ||||||| || ||||| || ||||| |||||| | | || || ||| || Sbjct 3906 CATCCGCAGCTCCAACCTTTGCACAGAGATTGTCGAGTACTCTGCCCCAGATGAGGTTGC 3965 Query 97340 AGTTTGCGTTCTGGCATC 97357 || ||| ||||||| Sbjct 3966 CGTGTGCAACTTGGCATC 3983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025064960600