Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1689 82.4 6e-11 >seq1689 Length=16827 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 |||||||||||| || || |||||||| | || || | ||||||| ||||| || || Sbjct 15683 CGTAGACTCCTTCTGGATGTTGTAATCAGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 15624 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 ||| |||| || | |||||| ||| ||| | |||||| || || || ||| || Sbjct 15623 CGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGGATCTTCGACTT 15564 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | ||| ||||| | ||| ||| | ||||| || || || || | ||| Sbjct 15563 GACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGGTGAGAGT 15504 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| || |||||||| Sbjct 15503 CTTGACGAAGATTTGCAT 15486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414554181146890