Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3654 181 1e-40 seq512 134 2e-26 >seq3654 Length=7047 Score = 181 bits (200), Expect = 1e-40 Identities = 580/885 (66%), Gaps = 16/885 (2%) Strand=Plus/Minus Query 62883 ATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940 ||||| || ||||| ||||||| || || ||||| ||||||| | | | || | Sbjct 4000 ATGTTGGCAGGGCAAGGGATGCCAAGTTGCACACGGCAACCTCATCTGGGGCAGAGTACT 3941 Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000 | ||||| |||||||| || | ||| || || | || | || || |||| Sbjct 3940 CGACAATCTCTGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCT 3881 Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060 | ||| || |||||||| || || ||||| || | || || ||| ||||||| || | Sbjct 3880 TGCGGTTGCAGGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGA 3821 Query 63061 TAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCT--TT 63117 ||| | | ||| | | || | ||||| || | ||| | |||| | || || Sbjct 3820 GAATGGAGTACCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGAC-CCTTACCCTCCTT 3766 Query 63118 CGTATAG-TGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 63175 | ||| | | | || || ||||| || || | || | |||| ||||| || Sbjct 3765 CTCGTAGCTCTCGTAGAGCGCCTCAAACTCATCGCCGTAGACGTCCGCCAAACCAGGGCA 3706 Query 63176 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63235 ||| | || ||||| | | ||| || |||| | || || || ||||| |||||||| Sbjct 3705 TTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATC 3646 Query 63236 AGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 ||| ||||| ||||| || || || || | || | |||||| ||||| |||| Sbjct 3645 AGGGATCCAGAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTTCCGTGGTTCT 3587 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 || | | || |||||| | | | ||| | ||||| || || | ||| ||||| | | Sbjct 3586 TTCTCAAGTCCAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAG 3527 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 | ||||| || ||||| || ||||| || | |||||| || ||||| || | || | | Sbjct 3526 CGCCAGGACGCTTGTTGCCACCCTGGTCAACGTATCTTGCAGTGTTGTTGAAGACACGGA 3467 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCAC 63474 ||| || | |||||||| || | || |||||||||| || || ||| |||||| Sbjct 3466 GCATAGGGACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCAC 3407 Query 63475 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT- 63533 | ||| ||| | || || || || || | || ||||| | || || ||| Sbjct 3406 GGATACGGTGAATGTTCAATCCGATGCCTCCAGCAGTCTTTGAGATCATGGCACA-CGTC 3348 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || | ||||||||||||||||| || ||||| || |||||| | | || ||| Sbjct 3347 TTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGAT 3288 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 |||| ||| | || || ||||| || | || || |||||||| || || || Sbjct 3287 GACAGCTGGGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAATAT 3228 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63713 || ||| | || ||||| ||||| || | || |||||| ||||| || Sbjct 3227 TTGGAAGACATGAGGTTGTATGTCTCGATGGTCTTCTCAATATCCTCGCCGTGAATGCCA 3168 Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 || || |||||||| | ||||||||| || || ||| | | |||| Sbjct 3167 ACGGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTTG 3123 >seq512 Length=30657 Score = 134 bits (148), Expect = 2e-26 Identities = 367/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||| ||||||||||| | || || ||||| || || || || Sbjct 18004 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 17945 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || | ||| ||||||||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 17944 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAGAAG 17885 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || || |||||||||| || | || || | | | |||| || Sbjct 17884 ATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGAATCCTTGTCTTGG 17825 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||| | |||||| || |||||||| || | ||||| || || || |||||||| Sbjct 17824 ATCCACCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATGGCATTG 17765 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| || | || | || || | || || ||||| | || || | Sbjct 17764 AAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTC 17705 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || | |||||||| || || || || || |||||||| || | ||||| | || Sbjct 17704 TCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATT 17645 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | | || || || | || || || || ||||||||| ||| || Sbjct 17644 TGGACCTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCG 17585 Query 33721 AAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTA-GTTTATTCCA 33776 || || || | || || || || || | ||||| | || | | || ||||| Sbjct 17584 AAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTC-GTTGAGACGGTTGTTCCA 17526 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | | || || || | ||| | || || | ||||| || |||||||| ||||| Sbjct 17525 GTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTT 17466 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 17465 CTTGTACATCTGCCAGAT 17448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622918505494600