Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3654 165 1e-35 seq512 131 2e-25 >seq3654 Length=7047 Score = 165 bits (182), Expect = 1e-35 Identities = 568/873 (65%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||||||| || || ||||| ||||||| | | | || | | ||||| Sbjct 3989 GCAAGGGATGCCAAGTTGCACACGGCAACCTCATCTGGGGCAGAGTACTCGACAATCTCT 3930 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 |||||||| || | |||||| || | || | || || ||||| ||| || Sbjct 3929 GTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 3870 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 |||||||| || || ||||| || | || || ||| ||||||| || | ||| | | | Sbjct 3869 GCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTAC 3810 Query 62927 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTTTCGTATAG-TGTA 62983 || | | || | ||||| || | ||| | ||| | || ||| ||| | | Sbjct 3809 CAAA-GCTTCTGGGCCTTGATGGTC---TTGCGACCCTTACCCTCCTTCTCGTAGCTCTC 3754 Query 62984 TACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 | || || ||||| || || | || | ||| ||||| ||||| | || || Sbjct 3753 GTAGAGCGCCTCAAACTCATCGCCGTAGACGTCCGCCAAACCAGGGCATTCGTTGGGGCA 3694 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||| | | ||| || |||| | || || || ||||| ||||||||||| ||||| || Sbjct 3693 CATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAGAG 3634 Query 63103 AGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 ||| || || || || | || | |||||| ||||| |||||| | | || | Sbjct 3633 AGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTTCCGTGGTTCTTTCTCAAGTCCA 3575 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 ||||| | | | ||| | ||||| || || | ||| ||||| | | | ||||| || | Sbjct 3574 GGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCGCCAGGACGCT 3515 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 |||| || ||||| || | |||||| || ||||| || | || | | ||| || | | Sbjct 3514 TGTTGCCACCCTGGTCAACGTATCTTGCAGTGTTGTTGAAGACACGGAGCATAGGGACGA 3455 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA 63341 |||| || || | || ||||| || | || || ||| ||||||| ||| || Sbjct 3454 TACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGAA 3395 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCA 63400 | | || || || || || | || ||||| | || || ||| || | || ||| Sbjct 3394 TGTTCAATCCGATGCCTCCAGCAGTCTTTGAGATCATGGCACA-CGTCTTGAGTGTGTCA 3336 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 ||||| ||||| |||||||| ||| |||||| | | || ||| |||| ||| Sbjct 3335 TAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCC 3276 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGT 63520 | || || ||||| || | || || |||||||| || || |||| ||| | Sbjct 3275 TGTGGTGTACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAATATTTGGAAGACATG 3216 Query 63521 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63580 || ||||| ||||| || | || |||||| ||||| || || || |||||| Sbjct 3215 AGGTTGTATGTCTCGATGGTCTTCTCAATATCCTCGCCGTGAATGCCAACGGCAACACGC 3156 Query 63581 ATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 || | ||||||||| || || ||| | | |||| Sbjct 3155 ATAATCATGTGCTGCGGCCTCTCAGCAACCTTG 3123 >seq512 Length=30657 Score = 131 bits (144), Expect = 2e-25 Identities = 366/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| ||||||||||| | || | ||||| || || || || Sbjct 18004 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 17945 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || | ||| ||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 17944 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAGAAG 17885 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 32837 || || || || || |||||||||| || | || || | | | |||| || Sbjct 17884 ATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGAATCCTTGTCTTGG 17825 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||| | |||||| || |||||||| || | ||||| || ||||| || ||||| Sbjct 17824 ATCCACCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATGGCATTG 17765 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| || | || | || || | ||||| || || | || || | Sbjct 17764 AAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTC 17705 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || | |||||||| || || ||||| || ||||||||||| | ||||| | || Sbjct 17704 TCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATT 17645 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | | || || || | || || || || ||||||||| ||| || Sbjct 17644 TGGACCTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCG 17585 Query 33078 AAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTA-GTTTATTCCA 33133 || || || | || || || || || | ||||| | || | | || ||||| Sbjct 17584 AAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTC-GTTGAGACGGTTGTTCCA 17526 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | | || || || | ||| | || || | ||||| || |||||||| ||||| Sbjct 17525 GTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTT 17466 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 17465 CTTGTACATCTGCCAGAT 17448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633602813326000