Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2427 96.9 7e-15 seq514 96.9 7e-15 >seq2427 Length=24716 Score = 96.9 bits (106), Expect = 7e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| || ||||| || ||||||| ||||| | ||||| || || | Sbjct 18495 CCAACTTCGGTCTCGATGCCGAGCTTGTCTCTCACTCCCGCATGCTGGGTCTCTCCGGTG 18436 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| | ||| ||| || |||| |||||| | ||||| ||||||| Sbjct 18435 GCCAGCGTGTCAAGGTCGTCCTCGCCGCCTGCTC-GTGGCAGCGTCCTCATTTGATCGTC 18377 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 ||||| |||||||||||||| |||||||| || ||| || ||||| Sbjct 18376 CTCGATGAGCCTACCAACTACCTGGACCGTGACTCCCTTGGTGCTCT 18330 >seq514 Length=32850 Score = 96.9 bits (106), Expect = 7e-15 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||| ||||| || ||||| || || ||||| |||| |||||||||| || Sbjct 17764 TCATTGGTGGCAACGGTGCCGGAAAGTCCACTCTCATCAAGCTCCTTACTGGCGAGA-CC 17822 Query 280234 AGGCCACTGAGGGGTCCGT-TTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 | ||| | || |||| ||| |||||| |||||| |||| || | |||| | || Sbjct 17823 ATCCCAACCACTGG-CCGTGTTGAGAAGCACCCCAACTTGCGTATTGGTTACATTAAGCA 17881 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 ||||||| | | ||| | |||| || || || | |||||| ||||| ||| | ||||| Sbjct 17882 GCACGCTCTTGAGCACGTTGAGATGCATCTCGAGAAGACTCCCAACCAGTACCTCCAGTG 17941 Query 280352 GCGCTATGC 280360 ||| || || Sbjct 17942 GCGTTACGC 17950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027788271649085