Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1689 158 2e-33 seq475 125 1e-23 seq1428 105 1e-17 seq514 91.5 3e-13 >seq1689 Length=16827 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | |||||||| ||||| || |||||||| ||||| || Sbjct 15712 CCACCACGGAGGCGGAGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAATCAGAC 15653 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || ||| Sbjct 15652 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 15593 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| ||||| ||||| | ||||||| |||||||| || | || || ||| Sbjct 15592 ATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTATCGATGGTATCCGACGACTCGACT 15533 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || ||||| ||||| ||||||||||| || ||||| Sbjct 15532 TCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 15486 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || ||| ||| || |||||||| || ||| Sbjct 15940 CCGCCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 15881 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| ||||| || | |||||| || || || || || | || ||||| ||||| Sbjct 15880 AGCGTCCTGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 15821 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||||||| ||||||||||| | || || || Sbjct 15820 ATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACC 15761 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | |||||||||||| |||||||| Sbjct 15760 TCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 15714 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||||||| || |||||||| || || ||||| || |||||| Sbjct 15256 CCACCGCGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 15197 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || ||||| || || Sbjct 15196 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 15137 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || ||||||||||| | || || || Sbjct 15136 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACC 15077 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||| ||||| || ||||| Sbjct 15076 TCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || || ||||| || || ||||| || || || Sbjct 15484 CCACCACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAC 15425 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 15424 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 15365 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | ||||||| || ||||| || | || || || Sbjct 15364 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCACC 15305 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || || ||||||||||| |||||||| Sbjct 15304 TCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || |||||| Sbjct 15028 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 14969 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | ||| ||||| || ||| Sbjct 14968 AGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 14909 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| ||| ||| |||||||| || | || || || Sbjct 14908 ATTCCCTCCTTGTCTTGGATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCAACC 14849 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 14848 TCGAGGGTGATGGTCTTGCCAGT 14826 >seq475 Length=36479 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| || || || || Sbjct 18389 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 18330 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| ||||| || ||||| || |||||||| || ||||| | |||||| ||| Sbjct 18329 AGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 18270 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| | |||||||||||| Sbjct 18269 ATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 18211 >seq1428 Length=2518 Score = 105 bits (116), Expect = 1e-17 Identities = 240/354 (68%), Gaps = 8/354 (2%) Strand=Plus/Plus Query 173099 AAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAAC 173158 || |||||||| || | ||||| || || ||| |||| || ||| |||||||| ||| Sbjct 465 AACATTGACACCATCTTCCACTTCGCCGCCCAGTCCCACGTTGACCTGTCGTTCGGAAAC 524 Query 173159 TCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGG 173218 ||| | || ||| | |||||||||||| |||||||| || || || | || | | Sbjct 525 TCGTACGGTTTCACCCACACCAACGTCTACGGCACCCACGTCCTGCTCGAGTCGGCCAAG 584 Query 173219 CTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGC 173278 | | ||| || |||| |||||| | | || ||||| || || ||||| ||| | Sbjct 585 ---AAGGTCGGCATCAAGCGCTTCATCCACATCTCCACCGATGAGGTCTACGGTGAGGTC 641 Query 173279 -AGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATA 173337 || || | | | || |||||| || || | | ||||| || || ||||| || Sbjct 642 GAGGATGAG-GATGATGACCTCCTCGA-GACCA-GCAT-CCTCGCCCCCACCAACCCCTA 697 Query 173338 TGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCT 173397 || || ||||||| | ||||| ||| ||| | | || || | | |||||| Sbjct 698 CGCCGCCTCCAAGGCCGCCGCCGAGATGTTGGTGCACTCTTACCAGAAGAGTTTCAAGCT 757 Query 173398 ACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGA 173451 || |||||| | ||| ||||||| || || ||||| || ||||||||||| Sbjct 758 CCCCGTCATCATCGTCCGCAGCAACAACGTCTACGGCCCCCACCAGTTCCCCGA 811 >seq514 Length=32850 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 || |||||||| |||||||| || ||||| | |||| | | || || ||| ||| Sbjct 17476 TCGAGGAAGCCGGAGTCGTGAGAAACAATCAGCGACGTGATCTCGGTGTGGGTCTTCAGG 17417 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | |||||| |||||| || |||| |||||| ||||||||||| ||||| Sbjct 17416 TACTCCTGGAGCCACTTGACGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCAAGAAGA 17357 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || | || || | || | || || | | |||| |||||||| ||||| || ||| Sbjct 17356 AGAACATCGGCCTTCATCAACATAGCCCTGGCAAGAGCGAGCTTCATCTTCCATCCACCG 17297 Query 225626 GACAGGGAGCCGA 225638 ||||||||||||| Sbjct 17296 GACAGGGAGCCGA 17284 Score = 89.7 bits (98), Expect = 9e-13 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || |||||||||| |||||||||||| ||| | || || || |||||| || | Sbjct 17951 GGCGTAACGCCACTGGAGGTACTGGTTGGGAGTCTTCTCGAGATGCATCTCAACGTGCTC 17892 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||| ||||| | ||| | || |||| |||||| |||||| ||| ||| Sbjct 17891 AAGAGCGTGCTGCTTAATGTAACCAATACGCAAGTTGGGGTGCTTCTCAACACGGCC--- 17835 Query 225094 AGTCGGTTG----TGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCAT 225149 ||| ||||| | |||||| || |||| ||||||||| || | ||| || ||||| | Sbjct 17834 AGT-GGTTGGGATGGTCTCGCCAGTAAGGAGCTTGATGAGAGTGGACTTTCCGGCACCGT 17776 Query 225150 TGGGGCCAATCACGCCAATCCGGGATGA 225177 || ||||| | | | | ||||| || Sbjct 17775 TGCCACCAATGATGGCCGTGCGGGAAGA 17748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921579947768200