Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1689 120 3e-22 seq512 109 5e-19 seq347 95.1 1e-14 >seq1689 Length=16827 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | |||||||| |||||||||||||| | Sbjct 15484 CCACCACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAC 15425 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | |||| || ||||| ||||||||||| Sbjct 15424 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 15365 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | ||| || | |||||||| Sbjct 15364 ATGCCCTCCTTGTC-TTGAATCTTGGACTTGACGTTG-TCAATGGTATCCGACGACTCCA 15307 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | ||| | ||| || ||||| ||||| || || ||||||||||| Sbjct 15306 CCTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 Score = 105 bits (116), Expect = 7e-18 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||| || |||||||||||||||| || | || | ||||| || || ||||| | | Sbjct 15905 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTGCCA-TCCTCCAGCTGCTTACCAGCAA 15847 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-- 138539 |||| || ||||| |||||||| || ||||| || || || ||| | || | || | Sbjct 15846 AGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATC-CTGAATCTTGGACTTGACG 15788 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||||| || | || || ||||||| || || Sbjct 15787 TTG-TCGATGGTGTCCGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTT 15729 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 15728 GACGAAAATCTGCAT 15714 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||| || ||||| || || || || | | Sbjct 15223 GACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCA 15164 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 15163 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACA 15104 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||| ||||||| || | || || ||||| || || || Sbjct 15103 TTG-TCGATGGTGTCGGACGACTCAACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTT 15045 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 15044 AACGAAGATTTGCAT 15030 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 15028 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 14969 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| ||||| || |||| |||| ||||| || |||||||| || Sbjct 14968 AGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 14909 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || | |||| ||| || | ||| |||| ||||| | Sbjct 14908 ATTCCCTCCTTGTC-TTGGATCTTGCTCTTAACGTTG-TCGATGGTATCGGAGGACTCAA 14851 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||||| || | || || ||||||| Sbjct 14850 CCTCGAGGGTGATGGTCTTGCCAGTCA 14824 >seq512 Length=30657 Score = 109 bits (120), Expect = 5e-19 Identities = 488/759 (64%), Gaps = 17/759 (2%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| || |||||||| || ||| ||||| | || |||||||||||| | || | Sbjct 17541 AACGACGATGAGCGCTACTTCATCTCCCACGTTCTCGCTTTCTTCGCCGCCTCTGACGGA 17600 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| |||||| ||||| | | |||| | | ||| | | | ||||| | Sbjct 17601 ATTGTCAACGAGAACCTCCTCGAGCGCTT-CAGCAGTGAGGTCCAAATCCCAGAGGCCCG 17659 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || ||| ||| | | |||||| | | ||| | |||| ||| || || Sbjct 17660 CTGCTTCTACGGTTTCCAAATCATGATCGAGAACATTCACGCCGAGACATACTCCCTCCT 17719 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCACGAGCGCG-ACACGCTGCTGAATGCGTTCGAG 52322 ||| || || | || || || || | ||| | || || | ||||| ||||| Sbjct 17720 CATCGA-CACATACATCAAGGAGCAGGCTCAACGCACATAC-CTCTTCAATGCCATCGAG 17777 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | || ||| || || |||||| | ||||| | | ||||||| | |||| Sbjct 17778 ACTATTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGGTGGATCCAA---GACAAG 17834 Query 52383 G---CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCC 52439 | | || | ||| |||| | || ||||| ||| |||||||| | || || ||| Sbjct 17835 GATTCTACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCC 17894 Query 52440 GGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTC 52499 ||| ||| || |||| || | | || | | ||| | ||| | |||||||| ||| Sbjct 17895 GGCTCCTTCGCATCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTC 17954 Query 52500 AGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC 52559 |||||| | || || || ||||| || || ||||| ||||| || |||||| || | Sbjct 17955 TCGAACGAGCTCATCTCCCGTGACGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTC 18014 Query 52560 AAGACGCGCGTG-ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGC 52618 | | | |||| || | | | | || | || | | | | || || Sbjct 18015 TCCCACCTCAAGCACCGCCCAA--GCAAGAAGGC-CGTCCAAGA-CGTCATTACCGAAGC 18070 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || | ||||| ||||||| || || | || || || | ||||| |||||||| Sbjct 18071 CGTCACCATCGAGCAGGAGTTCTTGACTGAGGCACTTCCCTGTGCTCTGCTCGGCATGAA 18130 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 ||| | | ||| | ||||| ||||| || || ||| | ||| || | ||||| Sbjct 18131 CGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATAGACTGCTGCTTTCTCTCGG 18190 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | ||||||| ||| | ||| || || || || ||| | ||||| || || | Sbjct 18191 AAACGAGAAGTACTACAAGTCGACCAACCCATTCGACTTCATGGAGAACATCTCCCTGGC 18250 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||| ||||||||||| |||| ||| || Sbjct 18251 GGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 18289 >seq347 Length=76637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| |||||||| || || |||| Sbjct 19957 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCG 19898 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 19897 AAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 19838 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| |||||||||||| | || | || || || ||||| || || Sbjct 19837 TTG-TCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTT 19779 Query 138600 TACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 19778 CACGAAGATTTGCATGACT 19760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239540913200