Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq347 141 2e-28 seq1689 127 5e-24 seq475 87.8 4e-12 >seq347 Length=76637 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||||||||| | ||| ||||| |||||||| |||| ||||||||| | | || Sbjct 19984 CGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 19925 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 19924 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCC 19865 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || || | Sbjct 19864 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGG 19805 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || ||||| Sbjct 19804 GTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTG 19767 >seq1689 Length=16827 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || |||||||||||||| || | ||||||||| | || || Sbjct 15478 CGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTG 15419 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||||| || ||||||||||||||| ||| || Sbjct 15418 CGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCC 15359 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| || | ||| || | | || || || | | Sbjct 15358 TCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCACCTCAAGC 15299 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| || || ||||| || Sbjct 15298 GTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTG 15261 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || |||||||| |||| |||||| |||| || ||| | || || Sbjct 15697 AGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAATCAGACAGAGTGCGGCCGTCC 15638 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || |||||||||||||| ||| || || || Sbjct 15637 TCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 15578 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || |||| ||| || ||| Sbjct 15577 TGGATCTTCGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTC 15518 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 15517 TTTCCGGTGAGAGTCTTGACGAAGATTTG 15489 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| |||||||| || | ||||||||| | | ||| Sbjct 15250 CGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTG 15191 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| || |||||||||||||| || || Sbjct 15190 CGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 15131 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || || | Sbjct 15130 TCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCGAGA 15071 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || ||||| Sbjct 15070 GTGATGGTCTTGCCAGTAAGGGTCTTAACGAAGATTTG 15033 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| |||||| |||| ||||||||| || ||| Sbjct 15934 CGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTC 15875 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||||||||| || || ||||| || |||||||||||||| || || Sbjct 15874 CTGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCC 15815 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | || || || | Sbjct 15814 TCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCGAGA 15755 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || ||||| || Sbjct 15754 GTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTG 15717 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 15013 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 14954 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| ||||| ||||||||||| |||||| || || Sbjct 14953 TCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 14894 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || || | ||||| ||| Sbjct 14893 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTC 14834 Query 199598 TTACCCGT 199605 || || || Sbjct 14833 TTGCCAGT 14826 >seq475 Length=36479 Score = 87.8 bits (96), Expect = 4e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | ||| | |||||| || |||||||| || || |||| Sbjct 18391 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 18332 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || || ||||||||||| |||||| || ||||| ||||| ||| || | Sbjct 18331 TCAGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 18272 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||||| | | || || || | ||||| ||||| ||||| Sbjct 18271 CGATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGT 18226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178865938321895