Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3654 255 7e-63 seq512 116 4e-21 >seq3654 Length=7047 Score = 255 bits (282), Expect = 7e-63 Identities = 737/1118 (66%), Gaps = 27/1118 (2%) Strand=Plus/Minus Query 106274 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 106333 ||| |||| || ||||| || ||||| | | ||| || ||||| || | || | Sbjct 4178 AATGCATCAGCAAGACCCTGGACACCAACAGCAACTGGCCTGTGACGGAAGTTGCTGCGT 4119 Query 106334 CGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 106393 | || ||| ||||| || | || |||||||| ||| | || || |||| Sbjct 4118 CTGGCCTCCTCGACGGGGTAGTAGTTGACGTCAATGATCTTGTTCAAGTTCTTAACAACA 4059 Query 106394 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 106453 | || ||||| || ||||| || | | ||| |||||| | | | ||||| Sbjct 4058 ACCTGTGTGACCTCGTGAAGCTTCTGGAAGTCATAAGTGCCGTTGGCCATGTCAACATAT 3999 Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 |||| ||||| | |||||||| ||||| || || |||||| | | |||||| Sbjct 3998 GTTGGCAGGGCAAGGGATGCCAAGTTGCACACGGCAACCTCATCTGGGGCAGAGTACTCG 3939 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | ||| ||||| || | |||||| || || || || | ||||| ||||| ||||| Sbjct 3938 ACAATCTCTGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTG 3879 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||||| ||||||||||| |||||| | || | || ||||| ||||| |||| |||| Sbjct 3878 CGGTTGCAGGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGA 3819 Query 106634 ATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTC 106689 || | | ||| | | || | | || | |||| ||| | || | |||||| ||| Sbjct 3818 ATGGAGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTACCCTCCTTCTC 3763 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 ||| | |||||| || |||||||| || || |||| | | ||| || || || Sbjct 3762 GTAGCTCTCGTAGAGCGCCTCAAACTCATCGCCGTAGACGTCCGCCAAACCAGG-GCATT 3704 Query 106750 -GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTG 106808 || || || | |||| ||| | || || ||| || ||||||||||| || || | Sbjct 3703 CGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAG 3644 Query 106809 GAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGT 106867 | ||||| || | | || | || | ||| || | || || | || ||||| | Sbjct 3643 GGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGA-CTTCCTCCTTTCCGTGGTTCTTT 3585 Query 106868 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 106927 | || || |||||||| | || |||||||||||||||||| | |||| |||| || Sbjct 3584 CTCAAGTCCAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCG 3525 Query 106928 CCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 || ||||| ||| | || | || || | || ||| ||| || || || Sbjct 3524 CC---AGGACGCTTGTTGCCACCCTGGTCAACGTATCTTGCAGTGTTGTTGAAGACACGG 3468 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCT 107041 ||||| || | ||||| | || | || || || || ||| | | |||| Sbjct 3467 AGCATAGGGACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCA 3408 Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | | || |||| || || || || ||||| ||||||||| |||||| | Sbjct 3407 CGGATACGGTGAATGTTCAATCCGATGCCTCCAGCAGTCTTTGAGATCATGGCACACGTC 3348 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || |||||||||| | || |||||||| || ||| | |||||| Sbjct 3347 TTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGAT 3288 Query 107162 GACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||| ||| || || ||||||||||||||||||||| ||||| | ||||| |||| || Sbjct 3287 GACAGCTG-GGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAA-AT 3230 Query 107221 ACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | |||| ||||| || ||||||||| | | ||||| || || ||||| ||| Sbjct 3229 A-TTTGGAAGACATGAGGTTGTATGTCTCGATGGTCTTCTCAATATCCTCGCCGTGAATG 3171 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT 107338 || | ||| |||||||||| ||||| || || | || | ||||||| || || Sbjct 3170 CCAACGGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTTGCCATCAAGGCGG 3111 Query 107339 TGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 |||| ||| | ||||||||| |||| |||||||| Sbjct 3110 AGAAGGTAGGACCGCTCAAGGGTCTTGAAGCCAAAGTA 3073 >seq512 Length=30657 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || |||||| ||||| | |||||| || Sbjct 17990 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGGCCAGCCATGAGGCC 17931 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| |||| | ||| || |||||||||||||||||||| || Sbjct 17930 ACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGC 17871 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTG 117463 ||||| |||| || |||| ||| |||| || | |||| | | ||| | | | Sbjct 17870 GGCAAAGGCAACGAGACGCTGGGCAAAGG-TAGAATCCTTGTCTTGGATCCACCTGACAG 17812 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| | |||||||||| ||| || || | ||| | |||||| Sbjct 17811 CCCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATGGC 17769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953624009400