Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq347 105 4e-18 seq1689 96.9 2e-15 seq475 82.4 5e-11 >seq347 Length=76637 Score = 105 bits (116), Expect = 4e-18 Identities = 156/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||| |||||||||| ||| || ||||| ||||| |||||||||||| | || || Sbjct 19978 CTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCA 19919 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || ||||| || || || || |||||||| | || | ||||||||| Sbjct 19918 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 19859 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGT 34942 || ||||| ||||| || | ||||| || | ||| || || | ||| Sbjct 19858 TCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGACGACTCCACCTCAAGGGT 19803 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || |||||||| ||||| ||||| Sbjct 19802 GATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 19764 >seq1689 Length=16827 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| ||||| || || | || |||| || Sbjct 15238 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 15179 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 15178 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 15119 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || || | ||||| || | |||||| |||| || ||||| Sbjct 15118 ATCTTCGACTTCAC--AT--TGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATGGT 15063 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| || ||||| |||||| Sbjct 15062 CTTGCCAGTAAGGGTCTTAACGAAGATTTGCATA 15029 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| ||| | || |||| |||||||| || || || || Sbjct 15448 TCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAG 15389 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| |||||| Sbjct 15388 ATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTG 15329 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | || || || || || || |||||||| || Sbjct 15328 TCAATGGTATCCGACGACTCCACCTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACG 15269 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 15268 AAAATCTGCATA 15257 >seq475 Length=36479 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| ||||| | ||| |||| || ||||| || || ||||| || Sbjct 18389 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 18330 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || ||||||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 18329 AGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT--T 18274 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || | ||| || || | ||| ||||| || ||||| | ||||| || Sbjct 18273 GTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGAC 18214 Query 34970 AAAG 34973 ||| Sbjct 18213 GAAG 18210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619020400680