Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq810 147 6e-30 seq512 116 1e-20 seq1166 93.3 1e-13 >seq810 Length=59582 Score = 147 bits (162), Expect = 6e-30 Identities = 219/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| | ||||||||| || ||||||||| | || || || || Sbjct 51576 TCTTCCAAAGCCTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCAGTCTTAACGGCG 51635 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| ||||||| |||||||| | ||| |||| || Sbjct 51636 GTATCAATAAGACCCTCACGACCAGCCATAGCGTGGAAGAAGAACTCCGACGGTGTAAGA 51695 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | ||| |||||||||| ||||| | ||| || || | || ||| || Sbjct 51696 CCTCTCAAGTACGAGTTCTCAACGAAGCCACGAGACTCAGGAGAGTAATCATCCTTTGTG 51755 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||||||| | || || | ||| | || |||||||| || || || |||| Sbjct 51756 AAATGTGGCAGGGTGCGGTACTTGAATCCGAAGGGAATACGCTTACCCTCCACAGACTGC 51815 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTT 302871 ||||| | || | ||||||| |||||||| | | |||||||| |||| Sbjct 51816 TGTCCGACAAGCGCAGTCATCTGGGAAATATTGATAGTGGAACCCTTGGATCCAGATCGG 51875 Query 302872 ACCATAATAAC 302882 |||||||||| Sbjct 51876 GCCATAATAAC 51886 Score = 98.7 bits (108), Expect = 3e-15 Identities = 127/173 (73%), Gaps = 7/173 (4%) Strand=Plus/Plus Query 301782 GGATGGATTCTTTGTGTT--TTCCGATAGAGACAGAATTTCTTCAATACGGGGAACACCA 301839 |||||| |||| |||| || ||||| ||||||||| | | ||| || ||||| Sbjct 50765 GGATGGTGTCTTGATGTTGGTTGCGATATT--CAGAATTTCCTTCAGACGCGGCACACCG 50822 Query 301840 CGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGA 301899 | || ||||| |||||||| |||||||| || |||||||| || || || | || Sbjct 50823 AGAGTGACGTT---CTTGGACGACACACCAGCGAAATGGAAAGTGTTGAGCGTCATCTGT 50879 Query 301900 GTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCTGG 301952 |||| |||||||||||| || ||||||| ||||||||||| || || || Sbjct 50880 GTAGCAGGCTCACCAATAGACTGGGCCGCAAGAATACCAACCATCTCGCCAGG 50932 >seq512 Length=30657 Score = 116 bits (128), Expect = 1e-20 Identities = 201/287 (70%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGCCATTAG 133431 || || || || |||||||| || | || | ||||| || | ||||| ||||| | Sbjct 17718 CTCATCGACACATACATCAAGGAGCAGGCTCA-ACGCACATACCTCTTCAATGCCATC-G 17775 Query 133432 CGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGC 133490 || | ||||||| ||||| ||||| ||||||||||| | | |||||||| |||||| Sbjct 17776 AGACTATTCCTTGCATTAAGAAGAAGGCTGACTGGGCTGTCAGGTGGATCCAAGACAAGG 17835 Query 133491 GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTG 133550 | | | ||||| ||||||||||| ||||| | || ||||| || || ||| | Sbjct 17836 ATTCTACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCG 17895 Query 133551 GTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTT 133610 | | ||| || ||||| ||||| || |||||||| | | |||| ||| || | Sbjct 17896 GCTCCTTCGCATCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCT 17955 Query 133611 CTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| || || || | ||||||| || ||||| || || ||| Sbjct 17956 CGAACGAGCTCATCTCCCGTGACGAGGGTCTCCACACTGACTTCGCC 18002 >seq1166 Length=8473 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||||||| ||||| || ||||| |||||||| | || || | Sbjct 6667 TGGGCAATTGTCATACGAGAAGGAATGGCGTGGGGGTTGATGATAAGATCAGGCACAATA 6726 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || ||| |||||| |||||||| | || | ||| || | ||||| ||||| ||||| Sbjct 6727 CCCTCACGAGTGAAAGGCATATCTTCTTGG-CGGTAAGTGATACCAATGGTTCCTTTTTG 6785 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| |||||| ||||||||||||||| Sbjct 6786 ACCGTGGCGAGAAGCGAACTTATCACCAAT 6815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471748109511845