Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq512 141 1e-27 seq8 131 2e-24 seq3638 129 7e-24 seq453 118 1e-20 >seq512 Length=30657 Score = 141 bits (156), Expect = 1e-27 Identities = 207/287 (72%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | ||||| |||| ||||| | ||||||||| ||||| Sbjct 17984 ACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGGCCAGCCATGAGGCCACGCTT 17925 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| || |||| ||| ||| ||||| ||||| ||||||||||||||||| Sbjct 17924 CTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGCGGCAAA 17865 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCC 869357 | | | ||| |||| ||||||| || || || | |||| ||||||| | | |||| Sbjct 17864 GGCAACGAGACGCTGGGCAAAG--GTAGAATCCTTGTCTTG--GATCCACCTGACAGCCC 17809 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTT 869416 |||| ||||| ||| | | | || | || |||||||| ||||||| || | | Sbjct 17808 AGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATGGCATTGAAGAGGTATGTGC-GT 17750 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | ||||||| || |||||||| ||||| || || ||||| Sbjct 17749 TGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTC 17703 Score = 129 bits (142), Expect = 7e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||| | |||||| |||||| ||||||||||||||| | || ||||| |||||| Sbjct 18290 GTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCAT 18231 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| || |||||||| ||| ||| |||||| || ||||| | Sbjct 18230 GAAGTCGAATGGGTTGGTCGACTTGTAGTACTTCTCGTTTCCGAGAGAAAGCAGCAGTCT 18171 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 |||||||| ||||| ||||| || ||| | | |||||||||||||| || || Sbjct 18170 ATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGAGCACA 18111 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | ||| ||| ||||| | |||||| |||||| ||| Sbjct 18110 GGGAAGTGCCTCAGTCAAGAACTCCTGCTCGATGGTGACGGCTTCG 18065 Score = 123 bits (136), Expect = 3e-22 Identities = 178/249 (71%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| ||||||||||| ||| ||||| ||||| ||| | |||||| | |||||| Sbjct 17699 GTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATTTGGAC 17640 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| | |||| || || ||||||||| || || ||||| ||||||||| || Sbjct 17639 CTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCGAAGAA 17580 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CG--ACACCCAGTGGAC 869811 ||| || ||||| ||| |||| |||||| |||||| |||| || ||||| | Sbjct 17579 AGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGACGGTTGTTCCAGTCGTG 17520 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| || | |||||| |||||||||| || ||||||||||| ||||| Sbjct 17519 AAGGTCCTTGGAGAGATCAATCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTA 17460 Query 869872 CATCTCCCA 869880 ||||| ||| Sbjct 17459 CATCTGCCA 17451 >seq8 Length=73410 Score = 131 bits (144), Expect = 2e-24 Identities = 125/159 (79%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||||||||| || || || || ||||| | ||||| || |||||||||| Sbjct 42555 AGGACAGCATCGGTGGTACCGTTACCTGCGTCATCAGGAACGTTCCTAGCGGCCTCGGCG 42496 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| |||||||||||||| |||||| |||||||||||||||||| ||||| |||| Sbjct 42495 AGCCCTGCTTTGACAAGATGGAGGCCATGCTCGCCCACGCCATGCTCAGCATCCCCGCCA 42436 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 ||||||| |||||| | ||| ||| || |||| |||| Sbjct 42435 CCAAGGGCTTCGAGGTCGGCTCCGGCTTCGGCGGTTGCG 42397 Score = 118 bits (130), Expect = 1e-20 Identities = 265/396 (67%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCG-TCGGCTGCATCATCGACGGCGTGCCGCCGTGCA 18154 || ||||||||||||| | || || | || |||||| |||| ||| || || | | Sbjct 43181 CTATGGCGAGTCGCACTGT-CGCTCGGTGGGATGCATCGTCGATGGCTGCCCCCCAGGAA 43123 Query 18155 TGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCG 18214 || || |||| ||||| |||||||||||| || || ||||| || |||||| ||| Sbjct 43122 TGGAGCTCACCGAAGCCGATATCCAGCCTCAGATGACCCGTCGCCGTCCTGGCCAGAGCG 43063 Query 18215 CACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACG 18274 | || | ||||| ||| ||||| |||| ||| ||||| || ||||| ||| || Sbjct 43062 CCCTGACGACGCCCCGCGACGAGAAGGATCAGGTCGAAATCCACTCCGGCACCGAGTTCG 43003 Query 18275 GCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCG 18334 || | || || ||| | ||| | || | | ||| ||||| |||||||| || | Sbjct 43002 GCGTTACACTGGGCACCCCCATTGGGATGCTCGTGCGCAACCAGGACCAGCGCCCAAAGG 42943 Query 18335 ACT------ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACA 18388 ||| | || ||| | | | || || || || || || |||| || ||| Sbjct 42942 ACTACGGGAACTCTACTATGGACCTGTTCCCACGCCCATCGCATGCGGACTGGACATACC 42883 Query 18389 TGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCC 18448 | | ||||||||| ||||||| |||||||| || || ||||| || |||||| Sbjct 42882 TCGAGAAGTACGGCGTCAAGGCCAGCTCGGGCGGCGGTCGCAGCTCTGCTCGTGAGACCA 42823 Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 | || || || || || ||| | || || |||| Sbjct 42822 TTGGACGAGTGGCTGCGGGTGCGATTGCGGATAAAT 42787 >seq3638 Length=5882 Score = 129 bits (142), Expect = 7e-24 Identities = 382/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 1852061 TCGCTGGCGCTCATCTT-GCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTG 1852119 || || ||||||||||| ||||| |||| | |||||| | | || || | ||| || Sbjct 584 TCACTCGCGCTCATCTTCGCCGC-CTCGCCCAAGCCCGGAATCATCGTATTCATCAGATG 526 Query 1852120 GAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCG 1852179 |||| | || |||| | ||||| | || |||||| | || |||||||| Sbjct 525 CGCGCGCACCTTGTATCCGATGCGGGGCAGATTCTCCATCGCAAAAGTGAAGATCTTGCG 466 Query 1852180 CTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCAT 1852239 ||| || ||||||||||| || ||||| ||||||| |||||| || ||||||||||| Sbjct 465 CTGATCCACGCCGCCAAACTGCGCATCGACATCGAGGTACTGCTCATCTAGGGCCTGCAT 406 Query 1852240 GAGCGGGTAGAGCACGTTGCTCAGGAGCGGGT-TGCGGTCCATCTTGACCACCTGAGCGG 1852298 ||| ||||| | || | | || ||||| ||||| | ||||| |||| ||| Sbjct 405 GAGGGGGTAAATCAGGCCCCCGAGCGTCGGGTCATCGGTCTGT-TTGACGACCTCCGCGC 347 Query 1852299 CGGCCTTTTGCGCCGTGCCGGTGCGCACGTGCG-CCGCGAGTCGGTAGAGGTCGAGCGCG 1852357 | ||||| || || || | ||||| | || || |||| | || |||| | | | Sbjct 346 CCGCCTTCTGGGCGACGCTGATGCGC-GTTACGCCCTCGAGCTTGAAGCGGTCCATTGTG 288 Query 1852358 TAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACG 1852417 ||| | |||| |||||| || ||| | || || ||||| || || ||| Sbjct 287 TAGTCCTTGCCGAGCTGGTAGGAGGATCCGAGGACGAATTCGAGGAGGCTGAGATCGACG 228 Query 1852418 CCGATGTGCTGGAGCATGGCCTTGAT--GGCAAACTCGTACCA-GCGGCACCGGTGTTCG 1852474 || | | |||| | ||| ||||| ||| || ||| | ||||| ||| ||| Sbjct 227 CCTACGGCGCGGAGGAGGGCTTTGATCAGGC-GGCT-GTAGTAGGCGGC-GCGGAACTCG 171 Query 1852475 ACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATC 1852534 || || || ||| | || ||| ||||||| |||| | ||||| | ||||||| Sbjct 170 ACGAGTTCGAGCGGGGCTTTCATGTTATCGAGGTACCCGTGGATATCGGCCAGGAGGATC 111 Query 1852535 TTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCT 1852594 ||||| | || || || ||| || ||||| | |||| |||||| || |||||| | Sbjct 110 TTGACGTGGCATCCTGCGGCGAGTAACTCGGCGATCTTGATGATGGGGACGAAGTAGGCG 51 Query 1852595 AGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATA 1852629 ||| ||| ||||| | || || ||||| || Sbjct 50 CAGTGAGGGCGACCCGTGGTGGCGGTTCCCCAGTA 16 >seq453 Length=1571 Score = 118 bits (130), Expect = 1e-20 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||||||| |||||||||| ||||||||||| |||||||| | || Sbjct 673 CTCTTCGAGATCATCCTCGCCTCCAACTACCTGGACATCAAGCCGCTGCTCGACGTCGGC 732 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| || ||||||||||| ||| || |||||||| | ||||| ||| Sbjct 733 TGCAAGACGGTGGCGAATATGATCAAGGGGAAGAGCCCGGAGGAGATTAGGAAGACGTTT 792 Query 1592288 AACAT 1592292 || || Sbjct 793 AATAT 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106836791643145