Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq512 167 4e-35 seq3638 136 6e-26 seq453 107 3e-17 >seq512 Length=30657 Score = 167 bits (184), Expect = 4e-35 Identities = 215/292 (74%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| | ||||||||| |||||||||||||| || |||| ||| ||| ||||| Sbjct 17947 AGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAG 17888 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| |||||||||||||||||| | ||||| |||| |||||| || | || | | Sbjct 17887 AAGATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAA--GGTAGAATCCTTGT 17830 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | ||||||| | | ||||| || ||||| ||| | | | || | || |||||| Sbjct 17829 CT-TGGATCCACCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATG 17771 Query 794557 GCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 || ||||||| || | | | || | ||||||| ||| |||||||||||||| || Sbjct 17770 GCATTGAAGAGGTATGTGCGT-TGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGA 17712 Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||| ||||| | ||| ||||| ||||| ||| ||||| || || |||||| Sbjct 17711 GTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAG 17660 Score = 125 bits (138), Expect = 1e-22 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | |||||| |||||| ||||||||||||||| | || ||||| |||||| Sbjct 18289 TAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATG 18230 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| ||||||| || | ||||| ||||||| ||||| || ||||| | Sbjct 18229 AAGTCGAATGGGTTGGTCGACTTGTAGTACTTCTCGTTTCCGAGAGAAAGCAGCAGTCTA 18170 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 ||||||||||| |||||||| || ||| | | |||||||||||||| || || | Sbjct 18169 TCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGAGCACAG 18110 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139 || || | ||| | | ||||| | |||||| |||||| ||| | |||| Sbjct 18109 GGAAGTGCCTCAGTCAAGAACTCCTGCTCGATGGTGACGGCTTCGGTAATGA 18058 Score = 109 bits (120), Expect = 9e-18 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| || | ||||||||| | ||||||| || |||||||| Sbjct 17665 AAGCAGCGGGCCTCTGGGATTTGGACCTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTG 17606 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || ||||| ||||||||| || ||||| ||||| ||| |||| ||||| ||| Sbjct 17605 ACAATTCCGTCAGAGGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCG 17546 Query 796261 TCGCTGAG-CGA--GACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| |||| || | ||||| | ||| | ||| || | |||||| |||||| Sbjct 17545 TCGTTGAGACGGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCGGTC 17486 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || || || ||||||||||| |||||||||| ||| ||| Sbjct 17485 CAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGATC 17447 >seq3638 Length=5882 Score = 136 bits (150), Expect = 6e-26 Identities = 401/599 (67%), Gaps = 22/599 (4%) Strand=Plus/Minus Query 2411385 ATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTT-GCCGTCCTTGGTGAGGCCCGGCA 2411443 |||||||||| | | || || ||||||||||| |||| ||| | | |||||| | Sbjct 603 ATCAATCTTGCTATCCGGGTCACTCGCGCTCATCTTCGCCG-CCTCGCCCAAGCCCGGAA 545 Query 2411444 CCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCA-GCGCCGGCAGGTGGTCGCGC 2411502 || || || | ||| || |||| ||| || | ||| ||||| | || | Sbjct 544 TCATCGTATTCATCAGATGCGCGCGCACCTTGTATCCGATGCGG-GGCAGATTCTCCATC 486 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 ||||| | |||||||||||||| || ||||||||||| || ||||| ||||||| | Sbjct 485 GCAAAAGTGAAGATCTTGCGCTGATCCACGCCGCCAAACTGCGCATCGACATCGAGGTAC 426 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGT-TGCGGTC 2411621 ||||| || |||||||||||||| ||||| | ||| | ||||| ||||| ||||| Sbjct 425 TGCTCATCTAGGGCCTGCATGAGGGGGTAAATCAGGCCCCCGAGCGTCGGGTCATCGGTC 366 Query 2411622 CATCTTGACCACCTGGGCGGCGGCCTTTTGCGCCGTGCCGACGGTCACGCG---CGCCGT 2411678 | ||||| |||| ||| | ||||| || || || || | |||| |||| | Sbjct 365 TGT-TTGACGACCTCCGCGCCCGCCTTCTGGGCGACGCTGATG----CGCGTTACGCCCT 311 Query 2411679 C-AGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737 | || ||| |||| | |||||| | ||| ||||||| | ||| | || | Sbjct 310 CGAGCTTGAAGCGGTCCATTGTGTAGTCCTTGCCGAGCTGGTAGGAGGATCCGAGGACGA 251 Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGAT--GGCAAACTC 2411795 ||||||| | || |||||| | | |||| | ||| ||||| ||| || Sbjct 250 ATTCGAGGAGGCTGAGATCGACGCCTACGGCGCGGAGGAGGGCTTTGATCAGGC-GGCT- 193 Query 2411796 GTACCA-GCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGG 2411854 ||| | ||||| ||| ||||||||| || ||| | || || ||||||| Sbjct 192 GTAGTAGGCGGC-GCGGAACTCGACGAGTTCGAGCGGGGCTTTCATGTTATCGAGGTACC 134 Query 2411855 CGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTT 2411914 |||| | ||||| | ||||||| | || | ||||| || ||| || ||||| | | Sbjct 133 CGTGGATATCGGCCAGGAGGATCTTGACGTGGCATCCTGCGGCGAGTAACTCGGCGATCT 74 Query 2411915 TAAAGATGGGCACAAAGTA-GCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATA 2411972 | | |||||| || ||||| || ||| || || ||||| | ||||| ||||| || Sbjct 73 TGATGATGGGGACGAAGTAGGCGCAG-TGAGGGCGACCCGTGGTGGCGGTTCCCCAGTA 16 >seq453 Length=1571 Score = 107 bits (118), Expect = 3e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | ||||| ||| | ||||||||| |||||||||| |||||||||| Sbjct 656 AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTCGCCTCCAACTACCTGGACATCAAGC 715 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | || ||||| | || |||||||| ||||| || | |||||||| ||| || |||| Sbjct 716 CGCTGCTCGACGTCGGCTGCAAGACGGTGGCGAATATGATCAAGGGGAAGAGCCCGGAGG 775 Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753 | || | ||||| ||||| || Sbjct 776 AGATTAGGAAGACGTTTAATAT 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915854409742715