Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq347 140 2e-28 seq1689 116 2e-21 seq475 95.1 8e-15 >seq347 Length=76637 Score = 140 bits (154), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||||||||| ||||| ||| ||||||||| ||||| |||||||| ||| | || || Sbjct 19978 CTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCA 19919 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| |||||||||||||| || |||||||| | || | ||||||||| Sbjct 19918 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 19859 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || || ||||| || | ||||| || | ||| || |||| ||| Sbjct 19858 TCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGACGACTCCACCTCAAGGGT 19803 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || ||||| ||||| |||||||| || ||||| ||||||| Sbjct 19802 GATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGA 19762 >seq1689 Length=16827 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| |||||||| ||| |||| |||| ||||| ||||| || ||||| Sbjct 15449 CTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAA 15390 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || |||||||| | || | ||||||||||| | || || |||||| Sbjct 15389 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTT 15330 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || |||| || || ||||| || || || ||||| || Sbjct 15329 GTCAATGGTATCCGACGACTCCACCTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGAC 15270 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 15269 GAAAATCTGCAT 15258 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 15013 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 14954 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||||||||||||||| ||||||||||| | || | ||||||||||| Sbjct 14953 TCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTC 14895 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 15241 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCC 15182 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 15181 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 15122 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || | ||| || || | || || Sbjct 15121 TGGATCTTCGACTTCAC--AT--TGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGAT 15066 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| || ||||| ||||| Sbjct 15065 GGTCTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||||||||||||| ||||| ||||| || | | |||| Sbjct 15925 AGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTGCCATCC 15866 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| || |||||||| | || | |||||||| || Sbjct 15865 TCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCC 15806 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | || |||||| Sbjct 15805 TGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCGAGAGTGATGGTC 15746 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| || || |||||||| Sbjct 15745 TTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 15714 >seq475 Length=36479 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/186 (72%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| || || ||||| || || |||| Sbjct 18391 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 18332 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| ||||||||||| | || | ||||||||||| | || || ||||| || Sbjct 18331 TCAGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT- 18275 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || | ||| || |||| ||| |||||||| ||||| | |||||| Sbjct 18274 -TGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTG 18216 Query 34964 ACAAAG 34969 || ||| Sbjct 18215 ACGAAG 18210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325678172831015