Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1689 89.7 4e-13 >seq1689 Length=16827 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||| | || ||||| || ||||| | || |||| | Sbjct 15258 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACGATTACGCTTGAGGTGGAGTCGTCG 15317 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || || ||| | || ||| ||| Sbjct 15318 GATACCATTGACAACGTCAAGTCCAAGATTCAAGACAAGGAGGGCATTCCTCCGGACCAG 15377 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||||||||| | | || || ||||||||||| Sbjct 15378 CAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTACAAC 15437 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| |||||||| || |||| |||| Sbjct 15438 ATTCAGAAGGAGTCGACTCTGCATTTGGT 15466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| ||| | || || || || ||||| | ||| ||| | Sbjct 15486 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCG 15545 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || ||||| ||||| || ||| | ||| ||| ||| Sbjct 15546 GATACCATCGATAACGTCAAGTCGAAGATCCAAGATAAGGAGGGCATTCCCCCGGACCAG 15605 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||||| || ||||| ||||||| | || || | || |||||| Sbjct 15606 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCTGATTACAAC 15665 Query 107736 ATTCAAAAGGAGTCTACG 107753 || || |||||||||||| Sbjct 15666 ATCCAGAAGGAGTCTACG 15683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398858886068965