Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1689 104 2e-17 seq512 86.0 6e-12 >seq1689 Length=16827 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | ||||| || |||||||||||||| || ||| || ||| || Sbjct 15467 AACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 15408 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||| | |||| || ||||| || || ||||| ||||| || || || Sbjct 15407 CAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTG 15348 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | ||||| | || |||||| || | ||| | ||| || Sbjct 15347 AATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCACCTCAAGCGTAATCGTCTT 15288 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | |||||||||||| Sbjct 15287 GCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 >seq512 Length=30657 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 || || || | |||||| ||||||| || |||| ||| || ||| || |||| ||| Sbjct 18066 GAAGCCGTCACCATCGAGCAGGAGTTCTTGACTGAGGCACTTCCCTGTGCTCTGCTCGGC 18125 Query 47106 ATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 47165 |||||||| | | ||| |||| |||||||| || || ||| | ||| || | Sbjct 18126 ATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATAGACTGCTGCTTTCT 18185 Query 47166 CTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCG 47225 |||||| | ||| || | || | || || || || || ||| | ||||| || Sbjct 18186 CTCGGAAACGAGAAGTACTACAAGTCGACCAACCCATTCGACTTCATGGAGAACATCTCC 18245 Query 47226 CTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262 || | |||||| ||||| || |||||||| || |||| Sbjct 18246 CTGGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 18282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589246096600