Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq512 241 2e-57 seq3654 109 8e-18 >seq512 Length=30657 Score = 241 bits (266), Expect = 2e-57 Identities = 365/507 (72%), Gaps = 12/507 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | || | Sbjct 17447 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGATTGATC 17505 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || || | |||||| |||||| | |||||| Sbjct 17506 TCTCCAAGGACCTTCACGACTGGAACAACCGTCTCAACGACGATGAGCGCTACTTCATCT 17565 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| ||||| ||| ||||||||| || || || || ||||||||| || Sbjct 17566 CCCACGTTCTCGC-TTTCTTCGCCGCCTCTGACGGAATTGTCAACGAGAACCTCCTCGAG 17624 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | | ||||||||| | |||||||| || | || ||||| ||||| ||| Sbjct 17625 CGCTTCAGCAGTGAGGTCCAAATCCCAGAGGCCCGCTGCTTCTACGGTTTCCAAATCATG 17684 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| ||||| ||| | || || ||||| ||||| |||||||| ||| ||||||| | | Sbjct 17685 ATCGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAG 17744 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | | | || ||||||| |||||||| || | || | | | ||| ||||| Sbjct 17745 GCTCA-ACGCACATACCTCTTCAATGCCATCGAGACTATTCCTTGCATTAAGAAGAAGGC 17803 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGG-AGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 |||||||| | | ||||||| |||| | || || || ||||||| |||| ||||| Sbjct 17804 TGACTGGGCTGTCAGGTGGATC--CAAGACAAGGATTCTAC-CTTTGCCCAGCGTCTCGT 17860 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | ||||||||| |||||||| ||||| ||||| ||| ||| |||| || ||||| Sbjct 17861 TGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCATCCATTTTCTGGCT 17920 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| ||||||||| | || || Sbjct 17921 CAAGAAGCGTGGCCTCATGGCTGGCCT 17947 Score = 89.7 bits (98), Expect = 7e-12 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 ||| |||||| |||||| | ||||| | | ||| | || || || || |||| Sbjct 18065 CGAAGCCGTCACCATCGAGCAGGAGTTCTTGACTGAGGCACTTCCCTGTGCTCTGCTCGG 18124 Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 ||||||||||| | | ||| || |||||||| || |||||||| | ||||| Sbjct 18125 CATGAACGCCAACT-TGATGAAGCAATACATTGAGTTC-GTCGCCGATAGACTGCTGCTT 18182 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710 | ||||| || ||||| ||||| | || ||||||| ||| | |||||| || Sbjct 18183 TCTCTCGGAAACG-AGAAGTACTACAAGTCGACCAACCCATTCGACTTCATGGAGAACAT 18241 Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGG 1456769 ||| || | ||||||||||||||| |||||| ||||| | ||| ||| ||| | || Sbjct 18242 CTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTACCAAAAGACTGG 18301 Query 1456770 CGTCA 1456774 |||| Sbjct 18302 TGTCA 18306 >seq3654 Length=7047 Score = 109 bits (120), Expect = 8e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || ||||| ||||| || || || | | ||| || || ||||| || | ||| Sbjct 3247 CCAACACTCTTCAATGCTGGTACACCACAGGCCCAGCTGTCATCCTGCTTCTTGGTCGAC 3306 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||||||||| |||||| ||| || | ||||| Sbjct 3307 ATGAAGGAGGATAGTATTGAGGGTATCTATGACACACTCAAGACGTGTGCCATGATCTCA 3366 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | || || |||||||| || | ||| | || ||| | || || ||| | Sbjct 3367 AAGACTGCTGGAGGCATCGGATTGAACATTCACCGTATCCGTGCCACTGGTGCATACATT 3426 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| | || ||||| | || || ||||| || || || ||| |||| Sbjct 3427 GCCGGTACCAACGGAAACTCGAACGGTATCGTCCCTATGCTCCGTGTCTTCAACAACACT 3486 Query 260165 GCGCGCTACGTCGACCAG 260182 || | ||||| |||||| Sbjct 3487 GCAAGATACGTTGACCAG 3504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177455774976970