Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3654 268 1e-66 seq512 109 7e-19 >seq3654 Length=7047 Score = 268 bits (296), Expect = 1e-66 Identities = 1162/1812 (64%), Gaps = 47/1812 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| ||||||||||| || | ||||| | | ||||| || | | Sbjct 4862 CGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCAAAGTGCATGGATGTG 4803 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| ||| ||||| | |||| || ||| | ||| |||| | ||||||| Sbjct 4802 ATCTTGCCCATTGTTGGGTCCTTCATGTGGATGTTGAGGGACTGGGACT--GATCAATGA 4745 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCA-TCTTA-ATTTCCCAAACTGT 110538 || || || | || ||||| | | || | | | | | || ||||| || || Sbjct 4744 AGGCTCCACGGTCAGCAGCCATCTGGACGA--TGGTACGCTGGGAGATCTCCCAGACGGT 4687 Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598 ||||| |||||| || | ||||| | | ||| ||||||||||| || || | Sbjct 4686 CTTGTAGAGGGCCTTGATGTCGGCAGGGATGTTGGGGATGTTCTGGATGGAGCCACCGTC 4627 Query 110599 CTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA- 110657 | | || | | |||||| | | ||||| ||||| || | | ||| |||| Sbjct 4626 CGCGATGATACGGTTCTTCATGTTGTCAGACCACAGACCCATGTCGACCAAGTCCTTGAG 4567 Query 110658 ---CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714 | ||| | ||||| | ||||| || || ||| | | | ||| |||| Sbjct 4566 CAACCAGGGG----TTGACTACTTGGAACTCGCCAGCCAGGACACGGCGCGAGTAAATGT 4511 Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTG 110774 | | |||||||| || || || || || || | || || | |||||| || || | Sbjct 4510 TCGAGGTGTATGGCTCGAAACACTCGTTGAAGCCGAGAATCTGGGAGGTGGAAGCAGTGG 4451 Query 110775 GCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAA 110834 |||| || || | | ||| ||| || | ||| | || ||| || | |||||||| Sbjct 4450 GCATAGGAGCAACGAGGAGAGAGTTGCGGACACCGTGCTGCTTTATCTGAGCCTTGAGAG 4391 Query 110835 CATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCC 110892 |||||||| | || | | || | || |||||||||| |||| ||| | || Sbjct 4390 AGTCCCAGTCCCACA-GATCGGTAGGGGTAACGC-CCCACATGTCGTACTGGAGCTCTCC 4333 Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA 110952 | ||| ||||||| ||||| |||| || || | || || | |||| || Sbjct 4332 CTTCGACACGGGAGATCCCTCGTAGGTCTCGTATGTGCCGTGAATCTGGGCCAGCTCCAC 4273 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012 | || || | |||| || ||||| |||||||| ||| || | |||||| Sbjct 4272 GGAGGCGGTCAAAGCACCGTGGTAAATGGTCTCAAAGATCTGAGAGTTGAGGAACTTGGC 4213 Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 || ||||| || | |||| | ||| |||| || ||||| || ||||| Sbjct 4212 CTCGGGGGAATCGAAAGGAAGGCGGAGAGCCAGGAATGCATCAGCAAGACCCTGGACACC 4153 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 | | ||| || ||||| || | || || || ||| ||||| || | || Sbjct 4152 AACAGCAACTGGCCTGTGACGGAAGTTGCTGCGTCTGGCCTCCTCGACGGGGTAGTAGTT 4093 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 |||||||| ||| | || || ||||| || ||||| || ||||| || | Sbjct 4092 GACGTCAATGATCTTGTTCAAGTTCTTAACAACAACCTGTGTGACCTCGTGAAGCTTCTG 4033 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | ||| |||||| | | | ||||| |||| ||||| | |||||||| || Sbjct 4032 GAAGTCATAAGTGCCGTTGGCCATGTCAACATATGTTGGCAGGGCAAGGGATGCCAAGTT 3973 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||| || || |||||| | | |||||| | ||| ||||| || | |||||| || Sbjct 3972 GCACACGGCAACCTCATCTGGGGCAGAGTACTCGACAATCTCTGTGCAAAGGTTGGAGCT 3913 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || | ||||| ||||| ||||| |||||| ||||||||||| ||||| Sbjct 3912 GCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCAT 3853 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431 | | || | || ||||| ||||| || | |||||| | | ||||| | || | | || Sbjct 3852 GAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTCTGGGCCTT 3793 Query 111432 GTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 | |||| ||| | || | |||||| |||||| | |||||| || ||||||| Sbjct 3792 G----ATGGTCTTGCGACCCTTACCCTCCTTCTCGTAGCTCTCGTAGAGCGCCTCAAACT 3737 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGA 111547 | || || |||| | | ||| || || || || || || | |||| ||| | Sbjct 3736 CATCGCCGTAGACGTCCGCCAAACCAGG-GCATTCGTTGGGGCACATGAGAGTCCAGTCG 3678 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 || | ||| || ||||||||||| || || || ||||| || | | || | || Sbjct 3677 CCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAAGTCA 3618 Query 111608 C-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666 | ||| || | || || | || ||||| || || || |||||||| | || ||| Sbjct 3617 CGGGCACGGA-CTTCCTCCTTTCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAAGACATC 3559 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTG 111720 ||||||||||||||| | |||| |||| || || ||||| ||| | || Sbjct 3558 CGCGTGCCATGGCTCGACGTAGATGGCGAAAGCGCC---AGGACGCTTGTTGCCACCCTG 3502 Query 111721 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 111780 | || || | || ||| ||| || || || ||||| || | ||||| | || | Sbjct 3501 GTCAACGTATCTTGCAGTGTTGTTGAAGACACGGAGCATAGGGACGATACCGTTCGAGTT 3442 Query 111781 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840 || || || || ||| | | |||| | | | || |||| || || || Sbjct 3441 TCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGAATGTTCAATCCGAT 3382 Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900 || ||||| ||||||||| |||||| | | || || |||||||||| | || Sbjct 3381 GCCTCCAGCAGTCTTTGAGATCATGGCACACGTCTTGAGTGTGTCATAGATACCCTCAAT 3322 Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAG 111959 |||||||| || ||| | |||||| |||| ||| || || ||||||||||| Sbjct 3321 ACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTG-GGCCTGTGGTGTACCAG 3263 Query 111960 CATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTTGTCGTATGT 112017 |||||||||| ||||| | ||||| |||| ||| |||| ||||| || |||||| Sbjct 3262 CATTGAAGAGTGTTGGGGAAGCGTGTGTGAA-ATA-TTTGGAAGACATGAGGTTGTATGT 3205 Query 112018 CTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTA 112077 ||| | | ||||| || || ||||| ||||| | || || ||||| | ||||| Sbjct 3204 CTCGATGGTCTTCTCAATATCCTCGCCGTGAATGCCAACGGCAACACGCATAATCATGTG 3145 Query 112078 CTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTT 112137 ||| || | || | ||||||| || || |||| ||| | ||||||||| || Sbjct 3144 CTGCGGCCTCTCAGCAACCTTGCCATCAAGGCGGAGAAGGTAGGACCGCTCAAGGGTCTT 3085 Query 112138 GAGACCAAAGTA 112149 || |||||||| Sbjct 3084 GAAGCCAAAGTA 3073 >seq512 Length=30657 Score = 109 bits (120), Expect = 7e-19 Identities = 333/509 (65%), Gaps = 7/509 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || ||||| || || || || |||||| || || | |||||| || Sbjct 17990 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGGCCAGCCATGAGGCC 17931 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| |||| | ||| || |||||||||||||||||||| || Sbjct 17930 ACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGC 17871 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||||| |||| || || | ||| |||| | ||| | | | ||| | | || Sbjct 17870 GGCAAAGGCAACGAGACGCTGGGCAAAGGTAGAATCCTTGTCTTGGATCCACCTGACAGC 17811 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| | |||||||||| ||| || || | ||| | |||||| | || | | | Sbjct 17810 CCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATGGCATTGAAGAGGTATGTGCG 17751 Query 122910 TTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCAT 122969 || || ||||| |||||| |||| || | || ||||| ||| | |||| | Sbjct 17750 TTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGCGTGAATGTT 17691 Query 122970 TTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 || || || | ||| | ||||||| |||| || || || || |||||| | | Sbjct 17690 CTCGATCAT-GATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATTTGGACCTCA-CTG 17633 Query 123029 CAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 123087 | || | | || ||||| |||||||| || || | || ||||| || || Sbjct 17632 CTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCGAAGAAAGCGAGA 17573 Query 123088 ATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAAGATCT 123144 | || ||||| | |||| || || | || | |||||||||| ||| || Sbjct 17572 ACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGACGGTTGTTCCAGTCGTGAAGGTCC 17513 Query 123145 TTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| | ||||| || || || ||||| Sbjct 17512 TTGGAGAGATCAATCTCCTCTGCGGTCCA 17484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003071276000