Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1435 147 7e-30 seq1689 145 2e-29 seq475 89.7 2e-12 seq1166 87.8 5e-12 seq810 87.8 5e-12 >seq1435 Length=8126 Score = 147 bits (162), Expect = 7e-30 Identities = 710/1121 (63%), Gaps = 15/1121 (1%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||||| ||||| || || || || || | | | | | |||| || | Sbjct 6728 ATCGGTATCGATTTGGGTACCACCTACTCGTGCGTGGGTATCTTCAGAGATGACCGCATT 6669 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || || ||| | ||||| ||||| | |||||| || || || Sbjct 6668 GAGATCATTGCCAACGACCAGGGCAACCGCACAACCCCATCGTTCGTTGCCTTCACTGAC 6609 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || || | || || || | || || Sbjct 6608 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACC 6549 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437 || || || || ||||| || || ||| | | || | ||| | || || | Sbjct 6548 GTCTTCGACGCCAAGCGTCTGATCGGTCGCAAGTTCGCCGACGCTGAGGTC----CAGGC 6493 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | | | || | ||| || | || || | | Sbjct 6492 CGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGAGGCAAGCCTGTCTGCCA 6436 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || || | || |||||| || || || || ||| | | Sbjct 6435 GGTCGAGTTCAAGGGCGAGACCAAGGACTTCACACCCGAGGAGATCTCCTCCATGATCCT 6376 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || || ||| || | ||||| || || | |||| | | || | | || ||| | Sbjct 6375 CGTCAAGATGCGCGAGACCGCTGAGGCCTACCTCGGTGGATCCGTCAACAACGCCGTTGT 6316 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || ||||| || || || |||||||| || || || ||||| || ||| Sbjct 6315 CACCGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCCGGTCTCAT 6256 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || || || | || || || || || || || || || || || || || Sbjct 6255 CGCCGGACTCAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATCGCTTACGG 6196 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||||| || | | || || || | || || || ||| | ||||||||||| Sbjct 6195 TCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTTGGTGGTGGTAC 6136 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || || | || ||||| || || || || || | ||||| || Sbjct 6135 TTTCGATGTCTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGG 6076 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || ||||| ||||| |||||||| || || || || || Sbjct 6075 TGACACTCACTTGGGTGGTGAGGATTTCGATAACCGTCTCGTCAACCACTTCGTCAACGA 6016 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||||| ||||| || | || | | || || | || | ||||| || Sbjct 6015 GTTCAAGCG-CAAGCACAAGAAAGACCTAAGCTCCAACGCTCGTGCCCTTCGTCGTCTCC 5957 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | ||||| || || ||||| ||||| | | || || || |||| ||||| || || | Sbjct 5956 GCACTGCATGCGAGCGTGCCAAGCGCACTCTTTCGTCCTCTGCCCAGACCTCCATCGAGA 5897 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 |||| ||||| || || || |||| | || || || ||||| || ||||| | Sbjct 5896 TTGACTCTCTCTTCGAGGGTGTTGACTTCTACACCTCCATCACCCGTGCCCGCTTTGAGG 5837 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | || |||||| || | | || | | || || || || | ||| | Sbjct 5836 AGCTGTGCCAGGATCTCTTCCGCTCCACCCTCCAGCCCGTCGACCGTGTCCTCGCAGACG 5777 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | || || ||| | || | | || | || | || || ||||| || ||||| | Sbjct 5776 CCAAGATCGACAAGACCAAGGTCCACGAGATCGTCCTCGTCGGAGGTTCCACCCGTATCC 5717 Query 350217 CAAAAGTTCA-ACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATT 350275 ||| | | || | | | | | | || | || || ||||| || || | || || Sbjct 5716 CAAGAATCCAGAGACTCA-TCACCGACTACTTCAACGGCAAGGAGCCCAACAAGTCCATC 5658 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || ||||| |||||||| || |||||||| || ||||| Sbjct 5657 AACCCTGATGAGGCTGTTGCGTACGGTGCTGCCGTGCAGGC 5617 >seq1689 Length=16827 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||| ||||| ||||| || ||||| || | Sbjct 15492 TTTGCATACCACCACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGT 15433 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||| ||||| || || ||||| | Sbjct 15432 AGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGT 15373 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || ||||| || | || || || ||||| | ||| || | Sbjct 15372 CCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACG 15313 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| |||| ||||| || || || || || || ||||||||||| Sbjct 15312 ACTCCACCTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||||||||| || |||||||| || || || || ||||| Sbjct 15716 CATACCACCACGGAGGCGGAGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAATC 15657 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || || || || || || || || ||||| || || Sbjct 15656 AGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGG 15597 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || ||||| || || || | || || ||||| || | ||| || | || Sbjct 15596 GGGAATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTATCGATGGTATCCGACGACTC 15537 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| |||||||||||| || || || || || || ||||| Sbjct 15536 GACTTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 15486 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | |||||||| ||||| || ||||| || || || Sbjct 15260 CATACCACCGCGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTC 15201 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||||||||| || || ||||| || || Sbjct 15200 GGAGAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGG 15141 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 15140 GGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTC 15081 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || || || || ||||| Sbjct 15080 AACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 105 bits (116), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 15036 TTTGCATACCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 14977 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || |||||||| ||||| || ||||| ||||||||||| | Sbjct 14976 AGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGT 14917 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || |||||||| || || || || || || ||| || || || || || | ||| || Sbjct 14916 CCGGGGGAATTCCCTCCTTGTCTTGGATCTT-GCTCTTAACGTTGTCGATGGTATCGGAG 14858 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | ||||| || || || | ||||| || || Sbjct 14857 GACTCAACCTCGAGGGTGATGGTCTTGCCAGT 14826 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| ||| || || || || || || | || | ||||| || | Sbjct 15920 CAAG-TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTGCCATCCTCCA 15862 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || || ||||| || || || || || || |||||||||| Sbjct 15861 GCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAA 15802 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || || || || || | || || | ||||| || || || | ||||||| Sbjct 15801 TCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCGAGAGTGATGGTCTTTC 15742 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || || || ||||||||||| Sbjct 15741 CAGTCAAGGTCTTGACGAAAATCTGCAT 15714 >seq475 Length=36479 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 18389 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 18330 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || |||||||| || || |||||||| || || ||||| || || | || ||||| || Sbjct 18329 AGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 18270 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || | || || | || || ||||| || | ||||| || || Sbjct 18269 ATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGT 18226 >seq1166 Length=8473 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 266972 AATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCC 267031 ||| || ||||| || || ||||||||| |||||||| |||||||||| | | | Sbjct 6816 AATTGGTGATAAGTTCGCTTCTCGCCACGGTCAAAAAGGAACCATTGGTATCACTTACCG 6757 Query 267032 TGAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCA 267091 ||||| ||||||| || | | || || ||| |||||| |||| || || || || Sbjct 6756 CCAAGAAGATATGCCTTTCACTCGTGAGGGTATTGTGCCTGATCTTATCATCAACCCCCA 6697 Query 267092 TGCTATTCCTAGTCGTATGACAATTG 267117 || |||||| |||||||||||||| Sbjct 6696 CGCCATTCCTTCTCGTATGACAATTG 6671 >seq810 Length=59582 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||||| || |||||||| || Sbjct 50811 CGCGGCACACCGAGAGTGACGTTC---TTGGACGACACACCAGCGAAATGGAAAGTGTTG 50867 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||||||||| ||||| || |||| || |||||||| || Sbjct 50868 AGCGTCATCTGTGTAGCAGGCTCACCAATAGACTGGGCCGCAAGAATACCAACCATCTCG 50927 Query 377578 CCAGGATTGACAATAGC 377594 ||||| ||||| | ||| Sbjct 50928 CCAGGGTTGACCAGAGC 50944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515182858684055