Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3654 205 1e-47 seq904 136 4e-27 seq512 127 2e-24 >seq3654 Length=7047 Score = 205 bits (226), Expect = 1e-47 Identities = 477/712 (67%), Gaps = 22/712 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAG--CCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCA 53300 ||||| ||| || | ||| ||||| || || || ||||| | ||||| || |||| Sbjct 3202 GAGACATACAACCTCATGTCTTCCAAA--TATTTCACACACGCTTCCCCAACACTCTTCA 3259 Query 53301 ACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACT 53360 | |||||||| || | ||| |||| ||||||| |||| | |||||||| || Sbjct 3260 ATGCTGGTACACCACAGGCCCAGCTGTCATCCTGCTTCTTGGTCGACATGAAGGAGGATA 3319 Query 53361 CGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTG 53420 || || || ||||| || || |||||| ||||||| ||||| ||| | || | Sbjct 3320 GTATTGAGGGTATCTATGACACACTCAAGACGTGTGCCATGATCTCAAAGACTGCTGGAG 3379 Query 53421 GTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 | ||||| | || || | ||| |||||| | || || || || || || Sbjct 3380 GCATCGGATTGAACAT-TC-ACCGTATCCGTGCCACTGGTGCATACATTGCCGGTACCAA 3437 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 ||| | | | || ||||| ||||||||||| |||||||||||||| || | ||||| Sbjct 3438 CGGAAACTCGAACGGTATCGTCCCTATGCTCCGTGTCTTCAACAACACTGCAAGATACGT 3497 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 |||||||||| ||||| || | |||||||||||| ||||||| |||||||| Sbjct 3498 TGACCAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCCATCTACGTCGAGCCATGGCACGC 3557 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 || | | ||||| || || || | ||| || || | || || | || ||| Sbjct 3558 GGATGTCTTTGAGTTCCTGGACTTGAGAAAGAACCACGGAAAGGAGGAAGTCCGTGCCCG 3617 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||| |||| ||| ||||| ||||| || || ||||||||| | || |||||| ||| Sbjct 3618 TGACTTGTTCTAC-GCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAACG 3676 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777 || ||| || |||||||| ||||| ||||| || | || |||||||| || | Sbjct 3677 GCGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGTTTGGCGGACGTCTACGGCGATG 3736 Query 53778 AGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGG 53831 ||||| | | | | || || ||| | | | |||| ||| |||| Sbjct 3737 AGTTTGAGGCGCTCTACGAGAGCTACGAGAAGGAGGGTAAGGGTCGC------AAGACCA 3790 Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891 ||||||| | || | ||| | | || ||| || ||| ||||| |||| || | Sbjct 3791 TCAAGGCCCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAACCCTT 3850 Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 |||| ||||||||| | |||| |||||||||||||||||| |||| Sbjct 3851 TCATGCTGTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 3902 Score = 100 bits (110), Expect = 3e-16 Identities = 297/450 (66%), Gaps = 15/450 (3%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || ||||| || || || || | ||||| | ||| | Sbjct 4423 CGCAACTCTCTCCTCGTTGCTCCTATGCCCACTGCTTCCACCTCCCAGATTCTCGGCTTC 4482 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | ||||| ||| |||||| ||| || || ||| Sbjct 4483 AACGAGTGTTTCGAGCCATACACCTCGAACATTTACTCGCGCCGTGTCCTGGCTGGCGAG 4542 Query 55604 TTTGTCATGATCAACAAGCACCTCGT----CAAGGACCTGCAGAAGATCAACAAGTGGAA 55659 || | ||||| ||| || ||||||| || | || |||| Sbjct 4543 TTCCAAGTAGTCAACC----CCTGGTTGCTCAAGGACTTGGTCGACATGGGTCTGTGGTC 4598 Query 55660 CCCGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716 | || |||| ||| | ||||| ||| || ||| ||||||| || | Sbjct 4599 TGACAACATGAAGAACCGTATCATCGCGGA-CGGTGGCTCCATCCAGAACATCCCCAACA 4657 Query 55717 TCCTCTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 ||| |||| | | |||||| | ||| ||| || |||||||| | ||| | | Sbjct 4658 TCC-CTGCCGACATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCCCAGCGTACCATC 4716 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 | | ||| |||||| ||||| || | ||| || ||||||||||| || |||||| | Sbjct 4717 GTCCAGATGGCTGCTGACCGTGGAGCCTTCATTGATCAGTCCCAGTCCCTCAACATCCAC 4776 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 ||| || | || || ||| |||| | | || ||||||||| || |||||| || Sbjct 4777 ATGAAGGACCCAACAATGGGCAAGATCACATCCATGCACTTTGCTGGTTGGAAGCTTGGC 4836 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| || |||||||| || || ||| Sbjct 4837 CTCAAGACCGGCATGTACTACCTCCGTACC 4866 >seq904 Length=81408 Score = 136 bits (150), Expect = 4e-27 Identities = 216/302 (72%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 |||||| | |||||||| | ||| |||||||| | |||||||| | ||| | |||||| Sbjct 30483 CGAGTGTAGATGTAACGTGGGCTGGCAGCATCACTTCCACCAGCCAAACGAGAACCGAAA 30542 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | |||||| ||||||| | ||| | |||||| | ||||||||||| |||||| | | Sbjct 30543 TTTCCACTTGGCTCCAGGCAGTTGACGTTGTTTGAGCCCACAAAGTCTTGAGCGAGACCG 30602 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC-GTA 117480 | ||| ||||| || || | ||| || || || || |||||| | ||| || ||| Sbjct 30603 ATAATAGTACCCTGCAGCGACTGCTCTCCGTGTTGGTATGCCGTCAG-TCCAGAACAGTA 30661 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTT-CTTCTTGAGGCAGGCATAAA 117539 || || |||| | | |||||||| || || || | ||| | | | ||| | || | Sbjct 30662 ACCAGCAAGCTCAACAACCTTCATATCCGAAGTAATGTTGCGAGTGAATGCA-GAGTAGA 30720 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATG 117598 | ||||| ||||||| ||||| ||||| || ||| ||||| || || ||| || || Sbjct 30721 TGACCTTTCGCTGACCCGGCTTAAGACCGTCAATAACG-GAGGGAATGGATCGCATGTTG 30779 Query 117599 TC 117600 || Sbjct 30780 TC 30781 >seq512 Length=30657 Score = 127 bits (140), Expect = 2e-24 Identities = 342/511 (67%), Gaps = 18/511 (4%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | ||||||| ||| || ||||||||||| | ||| || |||| | Sbjct 17962 TCGTTCGAGAAGGTCAGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCG 17903 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || ||||||||| || ||||| |||||||| || || || || || || Sbjct 17902 AAGGAGCCGGAGAAGAAGATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAAG 17843 Query 74910 GGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AG 74964 | | ||| ||| ||||| | |||||| ||||| ||| | | | || || Sbjct 17842 GTAGAATC-CTTGTCTTGGATCCACCTGACAGCCCAGTCAGC-CTTCTTCTTAATGCAAG 17785 Query 74965 GGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGT 75024 | | ||| ||||| || | ||||||| || | | | ||||||| | ||| Sbjct 17784 GAATAGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGT 17725 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGA 75084 | || | || ||||| ||||| | ||||| |||| | | ||| | |||||| Sbjct 17724 CGATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGA 17665 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATC-CT-TTGAAAAATTCATGTCGATATTCTCCAT 75142 | | || ||||||| || || || || || |||| || | || ||||| | Sbjct 17664 AGCAGCGGGCCTCTGGGATTTGGACCTCACTGCTGAAGCGCTC--GAGGAGGTTCTCGTT 17607 Query 75143 GACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 ||| || ||||| ||||||||||| ||||| || || ||| |||| ||||||||| Sbjct 17606 GACAATTCCGTCAGAGGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATC 17547 Query 75203 GTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGT 75259 ||| ||| | |||| ||| || | |||||| | | |||||||||||| | || Sbjct 17546 GTCGTTGAGACGGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCGGT 17487 Query 75260 CCAGAAA-CTCCCAATC-GCCTTTTTGTACA 75288 ||||||| | || || ||||| ||||||| Sbjct 17486 CCAGAAAGATGCC--TCGGCCTTCTTGTACA 17458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190793863000