Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq347 190 5e-43 seq1689 168 2e-36 seq475 138 3e-27 seq3654 120 7e-22 seq200 91.5 3e-13 >seq347 Length=76637 Score = 190 bits (210), Expect = 5e-43 Identities = 177/225 (79%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| ||||| | ||||||||||||||| || |||||||| || |||| ||| Sbjct 19988 TCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAG 19929 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 19928 GGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAAT 19869 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || || || ||||| ||||| || || ||||| Sbjct 19868 TCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTC 19809 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | ||||| Sbjct 19808 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 19764 >seq1689 Length=16827 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | ||||||||||||||| || || ||||| || || | || || Sbjct 15250 CGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTG 15191 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| || ||||| ||||| || ||||| || || | || Sbjct 15190 CGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 15131 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||||| || ||||||||||| || |||||||||||| Sbjct 15130 TCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCGAGA 15071 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | ||||| Sbjct 15070 GTGATGGTCTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||||||| ||| || |||||||| || || || || Sbjct 15935 ACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15876 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||| ||||||||||| || || ||||| ||||| || ||||| || || | || Sbjct 15875 CCTGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACC 15816 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| || ||||| ||||||||||| || ||||||||||| Sbjct 15815 CTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCGAG 15756 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || | ||||| || || | |||||| Sbjct 15755 AGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 15714 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || ||||| ||||| || || ||||| || |||| ||||| Sbjct 15479 ACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGACAGGGT 15420 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || |||||||| ||||| || ||||| ||||||| || Sbjct 15419 GCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCC 15360 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || ||||| || ||||| || || || ||||| || Sbjct 15359 CTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCACCTCAAG 15300 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || |||||||| || || | |||||| Sbjct 15299 CGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 15013 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 14954 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| || ||||| ||||| || |||| ||| |||||||| Sbjct 14953 TCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 14894 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || ||| ||||||||||| ||||| ||| Sbjct 14893 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTC 14834 Query 211083 TTTCCCGT 211090 || || || Sbjct 14833 TTGCCAGT 14826 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || ||||| || |||||||| ||||| | || || | || || Sbjct 15697 AGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAATCAGACAGAGTGCGGCCGTCC 15638 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| || |||| || ||||| || Sbjct 15637 TCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 15578 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || || || || || || || ||| Sbjct 15577 TGGATCTTCGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTC 15518 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| || || | ||||| Sbjct 15517 TTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 15486 >seq475 Length=36479 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | |||||| || ||||||||||| || ||||| Sbjct 18389 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 18330 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 |||||||| ||||| || |||| ||| ||||||||||||||||| || || || ||| Sbjct 18329 AGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 18270 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || || ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 18269 ATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 18211 >seq3654 Length=7047 Score = 120 bits (132), Expect = 7e-22 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | |||| |||||| |||||| ||||| || |||| Sbjct 3897 GTTCTTCTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTACAGCATGAAAGGGTTTCC 3841 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| |||| | |||||||| | |||||||| |||||| || ||||| Sbjct 3840 TGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCG 3781 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || || |||||||| | | ||||||| |||| || || || ||||| || Sbjct 3780 ACCCTTACCCTCCTTCTCGTAGCTCTCGTAGAGCGCCTCAAACTCATCGCCGTAGACGTC 3721 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | | ||| || || |||||||| | |||| |||| | |||| | || || || Sbjct 3720 CGCCAAACCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACG 3661 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||||||||||| |||| | |||||| || ||||| Sbjct 3660 CTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAA 3625 >seq200 Length=60548 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| ||||||||||| | || || || || ||||| ||||||| | ||||| || Sbjct 53129 CTTCCCAAGAAGCACGGTCGTGGTGGTCAGTCCGCTCTCCGTTTTGCCCGTCTTCGTGAG 53070 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 || ||| | ||||||||| | | ||||| ||||| ||| | ||| || |||| Sbjct 53069 GAGAAGCGTCACAACTACGTCCGTAAAGTCGCAGAATTGGCAGTGCAGAACTTCATCACC 53010 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 || | ||| ||| | |||||| ||||||| |||||||| || ||||||| Sbjct 53009 AACGATAAGGTCAACGTTGCCGGTATTATTTTGGCTGGTTCCGCCGATTTCAAGA 52955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159097271725025