Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1689 98.7 9e-16 seq347 98.7 9e-16 >seq1689 Length=16827 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || || |||| || || || | || ||| Sbjct 15238 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 15179 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| | Sbjct 15178 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 15119 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| || | | | | || ||| |||||| || || | ||||| | || Sbjct 15118 ATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATGGTCTTG 15059 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||||||||| Sbjct 15058 CCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||||||||| ||| || || || || ||||| | || || || |||| || ||||| Sbjct 15689 ATGTAGCGTAGACTCCTTCTGGATGTTGTAATCAGACAGAGTGCGGCCGTCCTCGAGCTG 15630 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||||| || || || ||||||||||| | ||| | || ||| || || ||| || Sbjct 15629 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGGATCTT 15570 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | |||| | | | ||||| |||||| || |||| ||| || | ||||| || Sbjct 15569 CGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGGT 15510 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| Sbjct 15509 GAGAGTCTTGACGAAGATTTGCAT 15486 >seq347 Length=76637 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || || || || || | ||| || || | || || Sbjct 19972 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 19913 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | ||| | | ||| |||||| | Sbjct 19912 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 19853 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| | | | || ||| ||||||||| || | |||||| | || Sbjct 19852 ATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 19793 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||||||||| Sbjct 19792 CCCGTCAGGGTCTTCACGAAGATTTGCAT 19764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429526308704405