Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1689 93.3 3e-14 >seq1689 Length=16827 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||||| || || || || ||||||||||| ||||| || | Sbjct 15030 ATGCAAATCTTCGTTAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCGTCC 15089 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 15090 GACACCATCGACAATGTGAAGTC-GAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 15148 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || || || || | |||||| | ||| ||||| Sbjct 15149 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCCGACTACAA 15208 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 15209 CATTCAGAAGGAGTCCAC 15226 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || ||||| || ||||||||||| ||||| || || Sbjct 15714 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCG 15773 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || || ||| | || || || || Sbjct 15774 GACACCATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCGGACCAG 15833 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || || || ||||| || | | || | |||| |||||| Sbjct 15834 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCAGGACGCTGAGCGACTACAAC 15893 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 15894 ATCCAGAAGGAG 15905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994419671980