Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1689 170 4e-37 seq347 154 3e-32 seq475 152 1e-31 >seq1689 Length=16827 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | ||||| || || |||||||||||||| Sbjct 15940 CCGCCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 15881 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||||||||| || || || || |||||||||| || || ||||| || Sbjct 15880 AGCGTCCTGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 15821 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| | || ||| | ||||| |||||||||| || || Sbjct 15820 ATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACC 15761 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 15760 TCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 15714 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||||| ||| || || ||||||||||| |||| Sbjct 15713 ACCACCACGGAGGCGGAGAACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAATCAGA 15654 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || || |||| || || ||||| || Sbjct 15653 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGG 15594 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| ||||||||||| | || ||| ||||||| || ||||| | ||||| Sbjct 15593 AATGCCCTCCTTATCTTGGATCTTCGACTTGACGTTATCGATGGTATCCGACGACTCGAC 15534 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || ||||| || || | |||||| ||||| || ||||| Sbjct 15533 TTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 15486 Score = 154 bits (170), Expect = 3e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || || || |||||||||||||| | Sbjct 15029 ACCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 14970 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || ||||| ||||||| |||||| ||||| || Sbjct 14969 GAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGG 14910 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||||||||||||| ||||| || ||| | ||||| || || || | || | Sbjct 14909 AATTCCCTCCTTGTCTTGGATC-TTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCAA 14851 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | ||||| ||||| ||||| || |||| Sbjct 14850 CCTCGAGGGTGATGGTCTTGCCAGTCA 14824 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| |||| || | ||| || || || ||||||||||| | Sbjct 15257 ACCACCGCGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 15198 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || |||||||||| || || ||||| || Sbjct 15197 GAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 15138 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 15137 GATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAAC 15078 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||||||||| || ||||| Sbjct 15077 CTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||| | || || || || ||||||||||| | Sbjct 15485 ACCACCACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 15426 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || ||||| || Sbjct 15425 CAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 15366 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| | || ||| | || || || ||||| | || || Sbjct 15365 AATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCAC 15306 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| || || | |||||| ||||| |||||||| Sbjct 15305 CTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 >seq347 Length=76637 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || | || |||| || | ||| || || |||||||||||||| | Sbjct 19991 ACCTCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 19932 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || ||||| ||||||| || || ||||| || Sbjct 19931 AAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 19872 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||||||||| || | || || Sbjct 19871 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCAC 19812 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 19811 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 19764 >seq475 Length=36479 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||| ||||| |||||||| || || || || ||||||||| Sbjct 18389 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 18330 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||||| ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 18329 AGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 18270 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 |||||||| || | || || || || ||||| ||||| |||||||| ||||| ||||| Sbjct 18269 ATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 18211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046689779189990