Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq347 143 2e-29 seq1689 138 8e-28 seq475 102 6e-17 >seq347 Length=76637 Score = 143 bits (158), Expect = 2e-29 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| |||| |||||| ||| |||||| ||||||||||| || | || || Sbjct 19981 AGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 19922 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || |||||||| ||||| ||||||| |||||||| || | || | || ||| Sbjct 19921 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCC 19862 Query 44240 TTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 || ||| ||||| ||| || ||| | || ||||||| || |||||||| | | Sbjct 19861 TTGTCCTGGATCTTGGACTTGACATTGT--CGATAGTGTCGGACGACTCCACCTCAAGGG 19804 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | || ||||| ||||| ||||||||||||||||||||||||| Sbjct 19803 TGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGA 19762 >seq1689 Length=16827 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| || |||||||| |||| ||| ||| | || || Sbjct 15238 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 15179 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||||| || | || | || ||||| ||| Sbjct 15178 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 15119 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||||| || || ||||| | || || ||||| Sbjct 15118 ATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATGGTCTTG 15059 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| |||||||||||||| Sbjct 15058 CCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||||||||||| ||||||||||| ||| || | | || || Sbjct 15923 CACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTGCCATCCTC 15864 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| |||||||| || | || | ||| ||||| ||| Sbjct 15863 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 15804 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||| | || || ||||| | || || ||||| Sbjct 15803 AATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCGAGAGTGATGGTCTT 15744 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | |||||| ||||| || ||||| Sbjct 15743 TCCAGTCAAGGTCTTGACGAAAATCTGCAT 15714 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || ||||| |||||| |||||||||||||| | || ||| |||| || Sbjct 15694 ACAAGATGTAGCGTAGACTCCTTCTGGATGTTGTAATCAGACAGAGTGCGGCCGTCCTCG 15635 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||| || | || | || ||||| || Sbjct 15634 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGG 15575 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | ||||| || | || || || |||| |||||| |||||| Sbjct 15574 ATCTTCGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTT 15515 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| Sbjct 15514 CCGGTGAGAGTCTTGACGAAGATTTGCAT 15486 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || |||||||| || | || ||| | || ||||||||||| || || || Sbjct 15449 CTCCTTCTGAATGTTGTAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAA 15390 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| |||||||| || | ||| | || ||||| || ||||| ||| | | Sbjct 15389 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTT 15330 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | || |||||||| | |||||||||||| || || || ||||| || Sbjct 15329 GTCAATGGTATCCGACGACTCCACCTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGAC 15270 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 15269 GAAAATCTGCAT 15258 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 15010 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 14951 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||| ||||| || | || | || ||||| || Sbjct 14950 AGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 14891 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| || ||| | ||||| |||| ||| || ||||| | || || ||||| Sbjct 14890 ATCTTGCTCTT-AACGTTGTCGATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTT 14832 Query 44308 TCCCGT 44313 || || Sbjct 14831 GCCAGT 14826 >seq475 Length=36479 Score = 102 bits (112), Expect = 6e-17 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| || ||||||| Sbjct 18391 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 18332 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| || ||||| || | || | || ||||| ||| |||||| ||| || ||| Sbjct 18331 TCAGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 18272 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| || |||||||| | || || ||||| ||||| | |||||| || Sbjct 18271 --CGATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGAC 18214 Query 44326 GAAG 44329 |||| Sbjct 18213 GAAG 18210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359974232493645