Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20WSF_203629_20[genbank_20GCA_5F001662585.1_2 02016-06-24] 409 sequences; 35,517,105 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq46 114 3e-20 seq18 104 5e-17 >seq46 Length=214393 Score = 114 bits (126), Expect = 3e-20 Identities = 183/259 (71%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| |||||||||||||| ||||| || || ||| || || ||||| |||||| Sbjct 140126 CCGATACCTCCAGCAGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATACCC 140185 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGG-GTGTGACTGT 94904 ||||| ||||| || | | | | | | |||||| || || || |||| |||| ||| Sbjct 140186 TCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGGGCCTGTG-GTGT 140244 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || ||||| |||||||| || || || || | | |||||||| | || Sbjct 140245 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTCGAAGACATGAGGTTGTA 140304 Query 94965 TGTTTCAATGACAGATTT---GATGTCTGATCCGTGAATGCCGACAGCCACACGCATAAT 95021 ||| || || || || || || |||||||| || || || ||||||||||| Sbjct 140305 TGTCTC---GATAGTCTTCTCAATATCCTCGCCGTGAATACCCACCGCAACACGCATAAT 140361 Query 95022 CATGTCCTGAGGGCGCTCA 95040 ||||| ||| || | |||| Sbjct 140362 CATGTGCTGCGGCCTCTCA 140380 >seq18 Length=361580 Score = 104 bits (114), Expect = 5e-17 Identities = 160/228 (70%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATT------T 101904 |||||||||||||| | ||||| ||| ||||| ||| |||| |||| | Sbjct 111197 CATCAAGAAGAAGGCCGACTGGGCAGTTAGGTGGATCCAAG---ATAAGGATTCCACTTT 111141 Query 101905 GGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGC 101964 || | | | |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 111140 CGCTCAGCGTCTCGTTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGTTCCTTCGC 111081 Query 101965 ATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTT 102024 |||||||||||| ||||||| | || | || |||| || |||| |||||| ||| | Sbjct 111080 CTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCCAACGAGCT 111021 Query 102025 CATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| || | ||||| ||||| || ||||| || ||| | || || Sbjct 111020 CATCTCCCGTGACGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTT 110973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578814270595