Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20WSF_203629_20[genbank_20GCA_5F001662585.1_2 02016-06-24] 409 sequences; 35,517,105 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 183 4e-41 seq46 138 2e-27 seq71 91.5 2e-13 >seq18 Length=361580 Score = 183 bits (202), Expect = 4e-41 Identities = 376/558 (67%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| | || || || ||||| | || ||| | ||||| Sbjct 111538 ATCTGGCAGATGTACAAGAAGGCGGAAGCGTCTTTCTGGACAGCAGAGGAGATTGATCTC 111479 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || | | ||| ||||| | || || || Sbjct 111478 TCCAAGGACCTTCACGACTGGAACAACCGCCTCAATGACGACGAGCGCTACTTCATCTCC 111419 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| |||| || || ||||| |||||||| || || | || Sbjct 111418 CACGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 111359 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || ||||| | ||||| ||||| |||||||||||||| Sbjct 111358 TTCAGCAGCGAGGTCCAGATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATCATGATC 111299 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---CG 125315 |||||| | ||| | || | ||||| || ||||||| ||||| || | | Sbjct 111298 GAGAACATTCACGCCGAGACATACTCCCTCCTCATTGACACATACATCAAGGAGCAAGCT 111239 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 ||||| | | || ||||| || || ||||| || | || | || || ||||| Sbjct 111238 CAACGCACATAC---CTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGCC 111182 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || |||||||| | || | | || | | ||| | | || || || Sbjct 111181 GACTGGGCAGTTAGGTGGATCCAAGATAAGGATTCCACTTTCGCTCAGCGTCTCGTTGCC 111122 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| ||||| ||||| |||||||| || ||| || || |||| || ||||||||| Sbjct 111121 TTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATTTTCTGGCTCAAG 111062 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||| | || ||||| | |||||| | || || || |||||||| Sbjct 111061 AAGCGTGGCCTCATGGCTGGCCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGT 111002 Query 125556 CTACACTGTGACTTTGCC 125573 || ||| |||||| ||| Sbjct 111001 CTCCACACTGACTTCGCC 110984 >seq46 Length=214393 Score = 138 bits (152), Expect = 2e-27 Identities = 347/522 (66%), Gaps = 4/522 (1%) Strand=Plus/Minus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 || ||||||| ||||| ||||| || || || || || | ||| ||||| | || | Sbjct 140024 CAAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTCGCCATCTACGTCGAGC 139965 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 | ||||| ||||| || ||||| || | || || | || ||| ||| || || | Sbjct 139964 CATGGCATGCGGATGTCTTTGAGTTCCTGGACCTGAGAAAGAACCACGGCAAGGAGGAAG 139905 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041 || ||| | |||||||| || || || ||| | || ||| | ||||||||||| || Sbjct 139904 TCCGTGCCCGTGACTTGTTCTACGCTCTATGGATCCCGGATCTCTTCATGAAGCGTGTTG 139845 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | | ||| |||||| || ||||||||| || | || || || | || || Sbjct 139844 AGAAGAACGGCGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGATTGGCAGACGTCT 139785 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGG-CCGATACGTGAGA 97160 ||||| ||||| ||||| ||| || ||||||| | ||||| | || ||| Sbjct 139784 ACGGCGATGAGTTCGAGGCGCTCTACGAGGGCTACGAGAAGGAGGGTAAGGGTCGCAAGA 139725 Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | |||| |||| || ||| | |||| | | ||||| ||||| |||| Sbjct 139724 CCA-TCAAGGCAC-AGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACGGGAAA 139667 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| | ||||||||| | || ||||| |||||||| || | || || Sbjct 139666 CCCTTTCATGTTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTAC 139607 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 |||| ||||||| ||||||||||| || || |||||| | | || || ||| ||| Sbjct 139606 CATCCGCAGCTCCAACCTGTGCACGGAGATCGTCGAGTACTCTGCCCCAGATGAGGTGGC 139547 Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||||||| | |||||| | || ||| || Sbjct 139546 CGTGTGTAACTTGGCATCCCTTGCTCTGCCGACGTATGTCGA 139505 >seq71 Length=163616 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || || || || || || || |||||||||||||||||||||| ||| ||||||| ||| Sbjct 80511 GAAGGTGACCTCGGCCCTGTCTACGGATTCCAGTGGAGGCACTTCGGCGCCAAGTACGTA 80570 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA 70161 ||| | |||| ||||| |||| ||||| |||||||| Sbjct 80571 GACGCCCAGACGGACTACACGGGGCAGGGCGTTGATCA 80608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055411334840