Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20WSF_203629_20[genbank_20GCA_5F001662585.1_2 02016-06-24] 409 sequences; 35,517,105 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18 140 4e-28 >seq18 Length=361580 Score = 140 bits (154), Expect = 4e-28 Identities = 367/554 (66%), Gaps = 7/554 (1%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| || || | |||||||| || | || || || ||||| || || || |||||| | Sbjct 110678 CATGACACCAGTCTTTTGGTAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTTCCTGC 110737 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 || || || || |||||||| ||||| || ||||| | || || | || | | | Sbjct 110738 CAGGGAGATGTTCTCCATGAAGTCAAATGGGTTGGTCGCCTTGTAG-TACTTCTCGTTAC 110796 Query 33120 CAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 | | ||| | || || || |||||||| || || ||| ||||||| | | Sbjct 110797 CGAGGGAGAGCAGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGT 110856 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || | || | ||||| ||| |||| | || || || || ||| || | Sbjct 110857 TCATGCCGAGCAGCGCACAGGGAAGTGCCTCAGTCAAGAACTCCTGCTCGATGCTGACAG 110916 Query 33239 CATCTGTTATAATAGATCTAACGGT-TTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297 | || || || | | |||| ||||| ||| || | || | ||| || Sbjct 110917 CCTCGGTAATGACGTCTTGGACGGCCTTCTT-ACTTGGGCGGTGTCTGAGATGGGAGAAG 110975 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | | || ||||| || ||| ||||||||||| | || || |||||||| || Sbjct 110976 AGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAG 111035 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || | ||| ||||||||||| || ||||| || ||||| ||||| || || || Sbjct 111036 GTCAGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAGGAACCGGAG 111095 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33474 |||||||| || || || ||||| ||||||| || | || | || || | | Sbjct 111096 AAGAAGATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGAGCGAAAGTGGAATCCTTA 111155 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 || || |||||| | ||||| ||||||||||| || | ||||| || || || ||| Sbjct 111156 TCTTGGATCCACCTAACTGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATG 111215 Query 33535 GCATTAAAGAGATA 33548 ||||| ||||| || Sbjct 111216 GCATTGAAGAGGTA 111229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944015182440