Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17 129 9e-25 seq12 114 2e-20 >seq17 Length=408792 Score = 129 bits (142), Expect = 9e-25 Identities = 328/494 (66%), Gaps = 5/494 (1%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || || || || || | || ||||| | || || | Sbjct 106041 GATACGTCGATCAGGGTGGCAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCAT 105982 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||||||||| || || || ||| | || | || || ||| ||| || || | | Sbjct 105981 GGCACGCGGATGTCTTCGAGTTTCTTGATCTCCGTAAGAACCACGGCAAGGAGGAAGTCC 105922 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || | || || || ||| | || ||| | ||||||||||| ||| | Sbjct 105921 GTGCTCGCGATCTTTTCCTCGCTCTTTGGATTCCTGATCTCTTCATGAAGCGAGTCGAGA 105862 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 ||| |||||| ||||||||||| | || || |||||| | ||| || | Sbjct 105861 GAAACGGCGACTGGACTTTAATGTGCCCCAATGAGTGCCCTGGTCTGGCTGATGTCTACG 105802 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAG 97164 |||| ||||| ||||| |||| | |||||| ||||| || | || ||| Sbjct 105801 GCGATGAGTTCGAGGCTCTGTACGAGAAATACGAGGCCGAGGGACGCGGCA--AGTCGA- 105745 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | |||| || ||| | |||||| | ||| ||| |||||||| | || Sbjct 105744 TCAAGGCCC-AGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACTGGTAACCCT 105686 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | || |||||||||||| | || ||||| |||||||| || | ||||||||| Sbjct 105685 TTTATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATC 105626 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 |||||||||| ||||| || || | |||||| | |||| || ||| || || Sbjct 105625 CGCAGCTCCAATCTTTGCACAGAGATCATCGAGTACTGCGCTCCTGATGAGGTTGCTGTG 105566 Query 97344 TGCGTTCTGGCATC 97357 ||| |||||||| Sbjct 105565 TGCAACCTGGCATC 105552 >seq12 Length=3698523 Score = 114 bits (126), Expect = 2e-20 Identities = 202/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||| | ||| ||| | || ||| Sbjct 321903 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAGGAGATTGACCTG 321962 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||| | || | || | |||| |||| || || || Sbjct 321963 TCCAAGGACATGCACGACTGGAACAACAAGATT-AATGAAGATGAGAAGTTCTTCATCTC 322021 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||||| | || |||||||||| || ||||| || |||||||| || ||| | || Sbjct 322022 CCACATTCTTGCTTTCTTTGCCGCGTCAGATGGCATTGTCAACGAGAACCTGGTCGAGCG 322081 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| || | || || || | ||| ||||| ||||| ||||| ||||||| Sbjct 322082 CTTCAGCGGCGAAGTCCAGATCCCCGAAG-CTCGATGCTTCTACGGCTTCCAGATCATGA 322140 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 322141 TGGAGAACATTCACTCCGAGACCTACTCGTTGCTCATTGACACCTACAT 322189 Score = 109 bits (120), Expect = 8e-19 Identities = 337/509 (66%), Gaps = 33/509 (6%) Strand=Plus/Plus Query 125359 CTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACG 125418 |||| || || ||||| | |||| | |||||||| ||| | || || | | || Sbjct 322301 CTATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCGCCGACAAGAACTCCACCTTCG 322360 Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGG 125478 || | | || | || ||||||||||| ||||| |||||||| ||| ||| || Sbjct 322361 CCCAGCGTCTCATTGCCTTCGCCGCCGTTGAGGGAATCTTCTTCAGTGGTGCTTTCGCAT 322420 Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 | ||||| ||| | ||||||||||| || |||||||| |||| |||||| | | Sbjct 322421 CTATCTTCTGGTTGAAGAAGCGCGGTCTTATGCCCGGCTTGACCTTTTCCAACGAGCTCA 322480 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATC 125595 | ||||| ||||| || || ||| || |||||| ||||||| || || || | | Sbjct 322481 TTTCTCGCGACGAAGGTCTGCACACCGATTTTGCCTGCTTACTGTTCTCCCATCTGAAGC 322540 Query 125596 TGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA---CCGATGCCG 125652 ||||| | ||| || ||| |||||| | ||| | ||| || | Sbjct 322541 ACCGTCCTG---GCA-----AG-GAT------GTCATCGAGGCTGTCATCGTCGACGCTG 322585 Query 125653 TGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAAC 125711 | | ||| |||||||| || | |||||| || | || | || | ||||||||||| Sbjct 322586 TCAAGATCGAACAAGAATTCTTGACCGAAGCCTTGCC-TTGTGCTCTTCTTGGCATGAAC 322644 Query 125712 TGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATT 125771 | || ||| |||| || |||||||| || || ||||| ||| || || Sbjct 322645 GCGGATCTCATGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTCCTGGTCG---CCCTT 322701 Query 125772 GGC--CG-CAAGATTTAC--AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 ||| || |||| | ||| || || || ||||| || |||||| | ||| || | Sbjct 322702 GGCAACGACAAGGTCTACCGTTCGTCA--AACCCCTTCGACTTCATGGAGAACATCTCGC 322759 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | | || ||||||||||||||||||||| Sbjct 322760 TCGGTGGCAAGACCAACTTTTTCGAGAAG 322788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058857260120