Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq23 109 5e-19 seq37 98.7 8e-16 >seq23 Length=3455761 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | || | ||| | ||| || ||||||||||| || |||||||| || | Sbjct 479355 ACCTCCACGGAGTCTCAGCACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 479414 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||| |||||||| ||| || |||| || |||||||| ||| | Sbjct 479415 GAGAGTG-CGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGG 479473 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| || || ||||| | | ||||| ||| | |||||| Sbjct 479474 GGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGCTCGACTCCA 479533 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||| | || || || || || ||||| || ||||| || |||||||| || Sbjct 479534 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGGT 479585 >seq37 Length=2347807 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| || | ||| || ||||||| || ||||| || | | Sbjct 2331143 CTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAA 2331202 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||||| || | | ||||||||| || || ||||| | Sbjct 2331203 GATAAGGCGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 2331262 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| |||||| ||||| || ||||| || |||||||| |||||| Sbjct 2331263 GTCG--ATGGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTTTTC 2331320 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 2331321 ACGAAGATCTGCATC 2331335 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||||||||| || || ||||||||||| || | || || || | ||||| || || Sbjct 2330904 TGAAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGA-AAGGGTGCGGCCATCCTCAAGTTG 2330962 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | |||| |||||||| || || | || ||||| || ||| || Sbjct 2330963 CTTGCCAGCAAAGATTAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATCTT 2331022 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | |||||||| | ||||| ||||| || ||||| || || || Sbjct 2331023 CGACTTGACGTTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGT 2331082 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || |||||||| Sbjct 2331083 GAGAGTTTTAACGAAGATCTGCAT 2331106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251010042037