Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq31 140 2e-28 seq37 98.7 7e-16 seq23 84.2 1e-11 >seq31 Length=3387 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 901 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 960 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 961 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 995 >seq37 Length=2347807 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| || |||||| || |||| || | ||| || || ||||| Sbjct 2331143 CTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCAAA 2331202 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || ||||||| ||||| ||| || |||||| || || ||| || || Sbjct 2331203 GATAAGGCGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 2331262 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || || || | || || || || || || | ||||||||| Sbjct 2331263 GTCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTTTTCAC 2331322 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 2331323 GAAGATCTGCAT 2331334 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || || |||||||| || || || ||||| ||||| | | || |||| || Sbjct 2330442 ACCAAGTGCAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCCTCC 2330501 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||||||||| || ||||| || || || | || | ||| || || ||| | Sbjct 2330502 AGCTGCTTTCCGGCAAAAATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGA 2330561 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||||| | || ||| || | || || ||||||| || ||||| || Sbjct 2330562 ATCTTCGACTTCACATTATCGATAGTGTC-CGACGACTCGACTTCTAGGGTGATAGTCTT 2330620 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| || ||||| Sbjct 2330621 GCCGGTAAGGGTCTTGACGAAAATTTGCAT 2330650 >seq23 Length=3455761 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || ||| | ||| || ||||||||||| || || ||||| || || | | || | || Sbjct 479370 CAGCACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATC 479429 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || ||||| || || | || || || || | ||||| |||||| ||||| Sbjct 479430 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTC 479489 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATA 38282 | || || ||| ||||| | | || | ||| || || || || | || ||| Sbjct 479490 CTGGATCTTGGACTTGACATTGTCAATGGTGTCGCTCGAC--TCCACCTCAAGGGTGATA 479547 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || ||||| | ||| |||||||| ||||||||| || Sbjct 479548 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGGTT 479586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947048959747