Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 109 5e-19 seq37 107 2e-18 seq23 96.9 3e-15 >seq12 Length=3698523 Score = 109 bits (120), Expect = 5e-19 Identities = 341/515 (66%), Gaps = 25/515 (5%) Strand=Plus/Plus Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397 ||||| ||||| | ||||| |||||||||||| | | | | |||| | ||| || Sbjct 322306 CGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCGCCGACAAGAACTCCACCTTCGCCCAG 322365 Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT-GCCGCCAT 52456 || | | ||||||||| || ||||| | || || || ||||| || | || Sbjct 322366 CGTCTCATTGCCTTCGCCGCCGTTGAGGGAATCTTCTTCAGTGGT-GCTTTCGCATCTAT 322424 Query 52457 CTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATC 52516 ||| | | || | | || | ||||||||| |||| || ||||||| | || || Sbjct 322425 CTTCTGGTTGAAGAAGCGCGGTCTTATGCCCGGCTTGACCTTTTCCAACGAGCTCATTTC 322484 Query 52517 GCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACTACAA---GACGCGCGT 52570 ||||||||||| |||||||| || ||||| ||| || | || | | || || | Sbjct 322485 TCGCGACGAAGGTCTGCACACCGATTTTGCCTGCTTACTGTTCTCCCATCTGAAGCACCG 322544 Query 52571 GACCGAAAAATTGGATTCGGACA-CGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCG 52629 | | || |||| | || ||| ||| ||| || || || || |||| Sbjct 322545 TCCTGGCAA---GGAT---GTCATCGAGGCTGT-CATCGTC---GACGCTGTCAAGATCG 322594 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 || | || || || || | || |||| | || || |||||||||||| | || Sbjct 322595 AACAAGAATTCTTGACCGAAGCCTTGCCTTGTGCTCTTCTTGGCATGAACGCGGATCTCA 322654 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAG 52748 || |||| ||||||||||| || || ||||| |||| || || | | ||| | Sbjct 322655 TGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCCCTTGGCAACGACAAGG 322714 Query 52749 TACTTCAACGCTCGC--AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 | || | || ||| || || || || || ||| | ||||| ||||| | ||||||| Sbjct 322715 T-CTAC--CGTTCGTCAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGTGGCAAGA 322771 Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 ||||||||||||||||||| |||| ||| ||| || Sbjct 322772 CCAACTTTTTCGAGAAGCGCGTCGCCGACTATCAG 322806 >seq37 Length=2347807 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || ||| || |||||||||||| || || | | Sbjct 2331141 GACTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCA 2331200 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || || || || || || ||||| ||| || || | Sbjct 2331201 AAGATAAGGCGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 2331260 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || || || || ||||| Sbjct 2331261 TTGTCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTTTTC 2331320 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2331321 ACGAAGATCTGCAT 2331334 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || ||||||||||||||| | || || ||||| ||||| || || | | || Sbjct 2330916 TCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAG 2330975 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TT 138541 ||||| ||||| ||||| || || ||||| || || || ||| | || | || | || Sbjct 2330976 ATTAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATC-TTGAATCTTCGACTTGACGTT 2331034 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||| || | ||||| ||||||| || | || || ||||| |||||||| | Sbjct 2331035 G-TCAATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTGAGAGTTTTAA 2331093 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 2331094 CGAAGATCTGCATG 2331107 >seq23 Length=3455761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | ||| || |||||||| || || |||| | Sbjct 479391 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 479450 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 || | ||||| |||||||| || || ||||| ||||| ||| || || | ||| Sbjct 479451 AATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATT 479510 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||||| ||||||||||||| | || | || || || || || || || | Sbjct 479511 G-TCAATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCA 479569 Query 138602 CAAAAATCTGCATGG 138616 | || |||||||||| Sbjct 479570 CGAAGATCTGCATGG 479584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262170478640