Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04-
20] 37 sequences; 44,711,451 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq37 120 3e-22
seq12 116 4e-21
seq23 96.9 3e-15
seq34 89.7 5e-13
>seq37
Length=2347807
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| |||||||| ||||| || || ||||| || || || || || |||
Sbjct 2331138 GTCGACTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCGTCCTCGAGTTGCTTGCCA 2331197
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||||||||| || ||||||||||||||| ||| || ||||
Sbjct 2331198 GCAAAGATAAGGCGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 2331257
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | | |||||| |||| || | || || ||||| || ||
Sbjct 2331258 ACGTTG-TCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGT 2331316
Query 127096 TTTTACAAAAATCTGCAT 127113
||| || || ||||||||
Sbjct 2331317 TTTCACGAAGATCTGCAT 2331334
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982
||||| ||||| ||||| || | ||||| ||| || || || || ||||| ||
Sbjct 2330688 TCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAG 2330747
Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042
|| | ||||||||||| ||||| ||||||||||| ||| ||| ||| ||| | |
Sbjct 2330748 ATAAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTCGACTTCACATTA 2330807
Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102
|||| ||||||| |||||| || | ||| | || |||||||| || || || ||
Sbjct 2330808 TCGATAGTGTCCGACGACTCGACCTCTAGGGTGATAGTCTTGCCGGTAAGGGTCTTGACG 2330867
Query 127103 AAAATCTGCAT 127113
||||| |||||
Sbjct 2330868 AAAATTTGCAT 2330878
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
|||||| || || ||||| || | ||||| || || ||||| ||||| || |
Sbjct 2330459 CTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCCTCCAGCTGCTTTCCGGCAAA 2330518
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
|| | |||||||| || ||||| ||||||||||| ||| || ||| ||| | |
Sbjct 2330519 AATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTTCGACTTCACATT 2330578
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| ||||||| ||||||||| | ||| | || |||||||| || || || ||
Sbjct 2330579 ATCGATAGTGTCCGACGACTCGACTTCTAGGGTGATAGTCTTGCCGGTAAGGGTCTTGAC 2330638
Query 127102 AAAAATCTGCAT 127113
||||| |||||
Sbjct 2330639 GAAAATTTGCAT 2330650
>seq12
Length=3698523
Score = 116 bits (128), Expect = 4e-21
Identities = 343/518 (66%), Gaps = 18/518 (3%)
Strand=Plus/Plus
Query 47070 CCCTGCG-TGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCAC 47128
|||||| | |||| |||||||| ||||| |||||| || | || | ||| |||
Sbjct 322296 CCCTGCTATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCGCCGACAAGAACTCCAC 322355
Query 47129 TCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188
| ||| | ||| | || || |||||| ||| ||||| |||||||| || ||||
Sbjct 322356 CTTCGCCCAGCGTCTCATTGCCTTCGCCGCCGTTGAGGGAATCTTCTTCAGTGGT-GCTT 322414
Query 47189 T-GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247
| || | || || | |||| | || ||||||||||| | || ||| |||||
Sbjct 322415 TCGCATCTATCTTCTGGTTGAAGAAGCGCGGTCTTATGCCCGGCTTGACCTTTTCCAACG 322474
Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTA 47307
|||| || || | |||||||| ||||||||| | |||||||| || ||| ||
Sbjct 322475 AGCTCATTTCTCGCGACGAAGGTCTGCACACCGATTTTGCCTG-CT----TACTGTTCT- 322528
Query 47308 GAGTCGATCAAAAG-TTGGACGTGCCCA--CCGTCAGCGA-CATGT--TTGCCGAAGCCG 47361
| ||| ||| | | || | | |||| ||| ||| | | ||| || |
Sbjct 322529 ---CCCATCTGAAGCACCGTCCTGGCAAGGATGTCATCGAGGCTGTCATCGTCGACGCTG 322585
Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421
|| || || || || || |||| || |||| || | | || |||||||
Sbjct 322586 TCAAGATCGAACAAGAATTCTTGACCGAAGCCTTGCCTTGTGCTCTTCTTGGCATGAACG 322645
Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481
|||| | |||| |||| ||||| ||||| |||||||| || || || ||
Sbjct 322646 CGGATCTCATGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCCCTTGGCA 322705
Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541
| |||| | |||| | || || ||||| || ||| | ||||| ||||||| |
Sbjct 322706 ACGACAAGGTCTACCGTTCGTCAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGTG 322765
Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579
|||||||||||||||||||||||||||||| ||| |||
Sbjct 322766 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAT 322803
>seq23
Length=3455761
Score = 96.9 bits (106), Expect = 3e-15
Identities = 170/247 (69%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| || || || | || || ||| | ||| | || ||| || || || ||||| |||
Sbjct 479353 GCACCTCCACGGAGTCTCAGCACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 479412
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| ||||| ||| || ||||| || || ||| | |||||||||||||| || ||
Sbjct 479413 GAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGG 479472
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||| ||||||||| ||| || ||||| | || | |||||| | |||
Sbjct 479473 GGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGCTCGACTCC 479532
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG---GCTTAT 127120
|| || | ||| | || ||||| || || || || || || ||||||||| || |||
Sbjct 479533 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGGTTGCCTAT 479592
Query 127121 TTATTCC 127127
| |||||
Sbjct 479593 TCATTCC 479599
>seq34
Length=2752027
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| ||| | || || ||| || ||||| || |||||| |||||
Sbjct 472592 TTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 472533
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 472532 AGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 472473
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||| || | | ||| || || | ||| | || ||||| ||||| || || || ||
Sbjct 472472 ATGGTATCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 472414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500580080880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |