Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq37 147 1e-30 seq23 95.1 8e-15 seq34 82.4 5e-11 >seq37 Length=2347807 Score = 147 bits (162), Expect = 1e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||||||||||||||||||||| ||||| |||||| | || |||| || || || Sbjct 2330903 GTGAAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGTTG 2330962 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| ||||| || ||||||||| | || | |||||||| || |||||| Sbjct 2330963 CTTGCCAGCAAAGATTAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATCTT 2331022 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | |||||| | || | ||| || ||| || |||| ||| ||||| || || || Sbjct 2331023 CGACTTGACGTTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGT 2331082 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || || ||||||||||| Sbjct 2331083 GAGAGTTTTAACGAAGATCTGCAT 2331106 Score = 105 bits (116), Expect = 4e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||||| |||||||| ||||| ||||| || || | || | || || Sbjct 2330441 AACCAAGTGCAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCCTC 2330500 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||||||||| || || || |||||||| | || | |||||||| || Sbjct 2330501 CAGCTGCTTTCCGGCAAAAATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTG 2330560 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| || || || ||||||| | ||| | ||| || || | ||| || | Sbjct 2330561 AATCTTCGACTTCAC--AT--TATCGATAGTGTCCGACGACTCGACTTCTAGGGTGATAG 2330616 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || ||||| || || || ||||| Sbjct 2330617 TCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 2330650 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| |||||||||||||||||||| ||||| |||||| | || |||| || || || Sbjct 2330675 GTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGTTG 2330734 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || || || ||||| ||| | || | |||||||| || ||||| Sbjct 2330735 CTTGCCAGCAAAGATAAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTT 2330794 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTC 34953 | || || || ||||||| | ||| | ||| || || | ||| || || || | Sbjct 2330795 CGACTTCAC--AT--TATCGATAGTGTCCGACGACTCGACCTCTAGGGTGATAGTCTTGC 2330850 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| || || || ||||| Sbjct 2330851 CGGTAAGGGTCTTGACGAAAATTTGCAT 2330878 >seq23 Length=3455761 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || || | || |||| || ||||| || ||| Sbjct 479386 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCG 479445 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | ||| |||||||| | || | || |||||||| ||||| ||| Sbjct 479446 GCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGACTTG 479505 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | || | || | | ||| || || | ||| || || || |||||||| ||| Sbjct 479506 ACATTGTCAATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 479565 Query 34965 TTCACAAAGATCTGCAT 34981 ||||| ||||||||||| Sbjct 479566 TTCACGAAGATCTGCAT 479582 >seq34 Length=2752027 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| ||||| | || |||| || ||||| || || || || || Sbjct 472592 TTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 472533 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || ||||||||| | || | ||||||||||| ||||| ||||| || | Sbjct 472532 AGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 472477 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || | ||| || || | ||| ||||| || ||||| || |||||||| Sbjct 472476 GTCGATGGTATCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 472417 Query 34970 AAAG 34973 ||| Sbjct 472416 GAAG 472413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633453610536