Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17 125 2e-23 seq23 100 8e-16 seq16 91.5 4e-13 seq1 86.0 2e-11 >seq17 Length=408792 Score = 125 bits (138), Expect = 2e-23 Identities = 559/879 (64%), Gaps = 10/879 (1%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | ||||| ||| || || || || ||||||||| | ||||||| Sbjct 105586 CGCAGTACTCGATGATCTCTGTGCAAAGATTGGAGCTGCGGATGGTGCCAAGGTTCTTCT 105645 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| || ||||||||| || || | ||| | || ||||| ||| Sbjct 105646 GGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATAAAAGGGTTACCAGTCTCGGTCT 105705 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || |||||| | |||| || || |||| | || | | Sbjct 105706 GCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTGATCGACTTGCCGCGTC---CCT 105762 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | | ||| |||||| ||||| | | | || || ||||| |||| ||| |||| Sbjct 105763 CGGCCTCGTATTTCTCGTACAGAGCCTCGAACTCATCGCCGTAGACATCAGCCAGACCAG 105822 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATA 155925 |||||| || |||||| | | | ||| || | || |||| ||| || | Sbjct 105823 GGCACTCATTGGGGCACATTAAAGTCCAGTCGCCGTTTCTCTCGACTCGCTTCATGAAGA 105882 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTGA 155984 |||| ||||| ||| |||||| || | || |||| |||| | |||||| Sbjct 105883 GATCAGGAATCCAAAGAGCGAGGAAAAGATCGCGAGCACG-GACTTCCTCCTTGCCGTGG 105941 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | || || | ||| | || |||||| || || ||||| Sbjct 105942 TTCTTACGGAGATCAAGAAACTCGAAGACATCCGCGTGCCATGGCTCAAGGTAGATAGCG 106001 Query 156045 AAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||| | | | |||||||||||||| || || | ||||| || ||||||||| Sbjct 106002 AAGGCACCGGGACGCTTGTTGCCACCCTGATCGACGTATCTCGCAGTGTTGTTGAAGACA 106061 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||| || | ||| || || || || || || || || ||| | ||||||| Sbjct 106062 CGCAGCATGGGGACAATGCCGTTTGATGTTCCGTTCGTGCCAGCAATGTAAGAACCAGTC 106121 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | |||| ||||| || || ||||| ||||||| |||| || || || || || Sbjct 106122 GCACGAATGCGATGAACATTGAGGCCAATGCCACCTG-CCATCTTTGAGATCATGGCACA 106180 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 ||| | || | | ||||| || || || || | ||| | ||| |||| Sbjct 106181 GGTCTTCAGGGTGTCATAGATACCCTCGATGCTGTCCTCCTTCATGTCGACCAGAAAGCA 106240 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 ||| | ||| | | || || ||||| ||||| ||||| || | |||||| | || Sbjct 106241 GGAAGACAGTTGGGCCTGAGGAGTACCAGCATTGAAGAGTGTGGGAGATGCATGTGTGAA 106300 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 ||||| ||||||| | ||| ||||| | | | | || | || | || || Sbjct 106301 GTACTTGCTAGACATGAGGTTGTACGTCTCGATGACCCTTTCGACATCATCGCCCCAGAT 106360 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | || || | ||| ||||||||| || ||||| |||| || | | Sbjct 106361 ACCAACAGCAACACGCATAATCATATGCTGCGGCCGCTCAGCAATTTTGCCGTTGAGCTT 106420 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| ||||||| || ||||| || || || || || || Sbjct 106421 CAGGAGGTATGATCGCTCCAGGGTCTTGAAGCCAAAGTA 106459 >seq23 Length=3455761 Score = 100 bits (110), Expect = 8e-16 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 302590 AAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACA 302649 || || |||||||| ||||| || | || || || || |||||||| | || | Sbjct 1770840 AATCGTCGCTGAATGTAACCCGTCTCGGCGGTCTTGACGGCAGTATCAATCAATCCTTCT 1770781 Query 302650 CGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTC 302709 || ||| |||| ||||||||| | | || ||| || || | | | | ||| || Sbjct 1770780 CGTCCAGCCATGGCATGGAAGTAGAATTCAGACGGGGTGAGACCTCTCAGATACGAGTTC 1770721 Query 302710 TCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 || ||||||||||| |||||||| |||| ||| |||||| || || || || || | | Sbjct 1770720 TCCACGAAACCACGGGCCTCGGGTGAATAATCGTCCTTGGTGAAATGAGGAAGTGTTCGG 1770661 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCAGGCACGAA 302826 | || | ||| | || ||||| ||||| ||||| |||||||| ||||| ||| Sbjct 1770660 TACTTGAATCCGAAAGGAATACGTTTTCCCTCAACAACCTGCTGTCCGACCAGGGCCGA- 1770602 Query 302827 ATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||| || || || || | || |||||||| |||| Sbjct 1770601 --CATTTGAGAGATGTTAATGGCAGAACCCTTGGATCCAG 1770564 >seq16 Length=460921 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || || || |||||||| ||||| ||| || Sbjct 262278 TGAGCAATGGTCATACGAGACGGAATGGCGTGAGGGTTGATGATAATGTCAGGTACCAAG 262219 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT-CAATAA-TGTTTCCAATAGTTCCCTTTT 251956 || ||| ||||| ||||| || || | | | ||| || ||||| |||||||||| Sbjct 262218 CCTTCACGGGTGAACGGCATGTC--TTCCGTACGGTAAGTGACACCAATGGTTCCCTTTT 262161 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||| |||||| |||||||| Sbjct 262160 GTCCGTGACGAGATGCGAACTTGTCACCAAT 262130 Score = 86.0 bits (94), Expect = 2e-11 Identities = 173/255 (68%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||||||||| | | || || ||||| ||| | || || || | || | | || Sbjct 262710 ATAAGACCACAGATCTCGCAGACGTGGACTCTGAATGCGTCCGACACCTCGAACAAACGC 262651 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||||| | ||||| ||||||||||||||||| |||||| Sbjct 262650 TCCTTCAAGAATGCCGCGGCACCGTGAGCGATCATGCAATCACGCTCCATTTCTCCGAAA 262591 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA--G 251584 || | |||||||| | || | ||||||| ||||||| | ||| |||| | || | Sbjct 262590 CGCAAGCCACCATCTCTGGCACGACCCTCGACAGGCTG--GCGTGTCATTATCTGTACCG 262533 Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 |||| || | | || ||| || | ||||| || |||||||||||| | | Sbjct 262532 GACCACGGGCTCTGGCGTGGATCTTGTCGTCGACCATGTGACGCAGACGCTGGTAGTAGG 262473 Query 251645 CGGGACCGATGAAGA 251659 ||| || | ||||| Sbjct 262472 TGGGTCCAAAGAAGA 262458 >seq1 Length=4509802 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||||| || | |||||| ||||| || |||||||| | ||| |||| | | || ||| Sbjct 1267086 TTTTTGCCGATAGCATCGATTTCATCGATGAAAATAATACAGGGAGCGCTCTTTCGCGCC 1267145 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | || || | |||| || ||||| || || | |||||| |||| || || || || Sbjct 1267146 GTGGCGAAGAGGTCTCGAACTCGGGAAGCACCTACACCAACGAACATCTCCACGAACTCG 1267205 Query 289144 GAAGCGGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| || ||| |||| ||| | || | ||| || || |||| | |||||||| Sbjct 1267206 GAACCGCTTACGCTGAA-GAAAGGAACCCCGGATTCACCGGCAGTTGCCTTAGCCAGAAG 1267264 Query 289203 TGTCTTACCTGTTCCAGGTGGTCC 289226 |||||| || ||||| || ||||| Sbjct 1267265 TGTCTTGCCCGTTCCCGGGGGTCC 1267288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816902266469