Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 5e-13 seq17 84.2 7e-11 >seq12 Length=3698523 Score = 91.5 bits (100), Expect = 5e-13 Identities = 136/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 443674 AGTGGCTCGAACGAGAAAATCTC-AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTC 443732 ||||| ||| ||| || | ||| | ||||| | |||| || | || || || | || Sbjct 322331 AGTGGATCGC-CGACAAGAACTCCACCTTCGCCCAGCGTCTCATTGCCTTCGCCGCCGTT 322389 Query 443733 GAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACT 443792 || ||| | || || || || ||||| || || |||||||||||||| ||||| || || Sbjct 322390 GAGGGAATCTTCTTCAGTGGT-GCTTTCGCATCTATCTTCTGGTTGAAGAAGCGCGGTCT 322448 Query 443793 TATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGA 443852 ||||| ||| |||||||| ||||| || || ||| ||||| ||| |||| ||| Sbjct 322449 TATGCCCGGCTTGACCTTTTCCAACGAGCTCATTTCTCGCGACGAAGGTCTGCACACCGA 322508 Query 443853 CTTCGCCTG 443861 || ||||| Sbjct 322509 TTTTGCCTG 322517 >seq17 Length=408792 Score = 84.2 bits (92), Expect = 7e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||| | || ||| | ||||| ||||||||| || | ||||||||||| || || Sbjct 106082 CGGCATTGTCCCCATGCTGCGTGTCTTCAACAACACTGCGAGATACGTCGATCAGGGTGG 106023 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 | ||| || || || || ||| | |||||||| ||||| |||||||| || Sbjct 106022 CAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCGGA 105972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335247029465