Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq37 163 7e-35 seq23 138 3e-27 seq34 129 1e-24 seq17 87.8 4e-12 >seq37 Length=2347807 Score = 163 bits (180), Expect = 7e-35 Identities = 175/230 (76%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||||||||| || || ||||| ||||| ||||| || |||| | || Sbjct 2331114 CGAAGCCGAAGGACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCCGACAAAGTG 2331173 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || || |||||||| || ||||||||||| || || || || || | || Sbjct 2331174 CGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGATCGGGGGGGATGCCC 2331233 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || ||||||||| Sbjct 2331234 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGA 2331293 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGGT 211122 ||||| ||||| || ||||| || || || || | |||||| | |||||| Sbjct 2331294 GTGATGGTCTTCCCGGTGAGGGTTTTCACGAAGATCTGCATCTCTATGGT 2331343 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| ||| ||||| || ||||| || || | |||||| | ||||| Sbjct 2330667 AGGACAAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCC 2330726 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || ||||||||||| || || || ||||||| || ||||| ||| Sbjct 2330727 TCAAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTATCC 2330786 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || || ||||| || ||||| ||| Sbjct 2330787 TGGATCTTCGACTTCACATTATCGATAGTGTCCGACGACTCGACCTCTAGGGTGATAGTC 2330846 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| || || | |||||| Sbjct 2330847 TTGCCGGTAAGGGTCTTGACGAAAATTTGCATT 2330879 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| ||| ||||| || ||||| || || | |||||| | ||||| Sbjct 2330895 AGGACAAGGTGAAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCC 2330954 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || ||||| ||||| || ||||| || || | || ||||| || Sbjct 2330955 TCAAGTTGCTTGCCAGCAAAGATTAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATCT 2331014 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || ||||| |||||| || |||||||| || || ||| Sbjct 2331015 TGAATCTTCGACTTGACGTTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTAATGGTC 2331074 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || || || | |||||| Sbjct 2331075 TTGCCAGTGAGAGTTTTAACGAAGATCTGCAT 2331106 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| |||| || || | ||| || ||| |||||| |||||||| || || | || Sbjct 2330426 TCCACGCAGTCGGAGAACCAAGTGCAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGAGAG 2330485 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || ||||||||||| || || || || ||||| || ||||||||||||| Sbjct 2330486 AGTGCGGCCGTCCTCCAGCTGCTTTCCGGCAAAAATGAGGCGCTGCTGGTCAGGAGGAAT 2330545 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| ||||| ||||| ||||| || ||||| ||||| || || || || Sbjct 2330546 GCCCTCCTTATCCTGAATCTTCGACTTCACATTATCGATAGTGTCCGACGACTCGACTTC 2330605 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | ||||| Sbjct 2330606 TAGGGTGATAGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 2330650 >seq23 Length=3455761 Score = 138 bits (152), Expect = 3e-27 Identities = 168/228 (74%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || || || || || ||| ||| || |||||||| || || | || Sbjct 479358 TCCACGGAGTCTCAGCACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAG 479417 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| ||||| || | || || ||||| || || | Sbjct 479418 AGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGAT 479477 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAAC 211066 |||||||||||||||||||| || || || || |||||||| ||| || || Sbjct 479478 GCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTC---GCTCGACTCCAC 479534 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 479535 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 479582 >seq34 Length=2752027 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||| || | ||||| || ||||||||||| |||||||| Sbjct 472592 TTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 472533 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 472532 AGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 472473 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 472472 ATGGTATCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 472414 >seq17 Length=408792 Score = 87.8 bits (96), Expect = 4e-12 Identities = 182/264 (69%), Gaps = 13/264 (5%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTAC-GCAATGAAGGG 178143 |||| |||||| ||||||||||| | |||| || ||| ||||| ||| ||||| Sbjct 105633 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TG--ATCCTTGTAGAGCATAAAAGGG 105689 Query 178144 CATTCCCAC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202 || ||| ||| | || ||| |||| ||| || ||| |||| |||||| || | Sbjct 105690 --TTACCAGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTGATCG 105747 Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 ||| | | ||| || |||||| || | ||| || ||||||| || || | Sbjct 105748 ACTT---GCCGCGTCCCTCGGCCTCGTATTTCTCGTACAGAGCCTCGAACTCATCGCCGT 105804 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 |||||||| | ||||| || |||||||||||| | | | |||| | |||| | || Sbjct 105805 AGACATCAGCCAGACCAGGGCACTCATTGGGGCACATTAAAGTCCAGTCGCCGTTTCTCT 105864 Query 178323 TCACTCGTTTCATGAAGAGGTCAG 178346 ||||| ||||||||||| |||| Sbjct 105865 CGACTCGCTTCATGAAGAGATCAG 105888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151450489505