Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 152 1e-31 seq37 138 3e-27 seq17 89.7 1e-12 >seq23 Length=3455761 Score = 152 bits (168), Expect = 1e-31 Identities = 166/219 (76%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || ||||| || || || |||||||| |||||||| ||| Sbjct 479579 CAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC--- 479523 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| || || ||||| ||||| |||||||| ||||| ||||| ||||||||| Sbjct 479522 GACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 479463 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | || |||||||| || |||||||| ||||| | ||||| |||| || ||| Sbjct 479462 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCCGACTACAAC 479403 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||| || || || || ||||| || |||||||| Sbjct 479402 ATCCAGAAGGAGAGCACCCTCCATCTCGTGCTGAGACTC 479364 >seq37 Length=2347807 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| || || || || ||||||||||| || ||| || Sbjct 2331103 CAGATCTTCGTTAAAACTCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCTGAT 2331044 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||| || || || || ||||| || |||||||| Sbjct 2331043 ACCATTGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCAGACCAGCAG 2330984 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || || ||||| | || ||| |||| || ||| | Sbjct 2330983 CGCCTAATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATT 2330924 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||| ||||| || ||||| Sbjct 2330923 CAGAAAGAAAGCACACTTCACCTTGT 2330898 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || || || ||||| |||||||| || || ||| Sbjct 2331331 CAGATCTTCGTGAAAACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCTTCCGAC 2331272 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || || ||||| Sbjct 2331271 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAG 2331212 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || ||||| || || | ||| | | || || ||| | Sbjct 2331211 CGCCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGCACTTTGTCGGACTACAACATT 2331152 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || ||||| Sbjct 2331151 CAAAAGGAGTCGACCCTCCACCTTGT 2331126 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || |||||||| || || || || ||| Sbjct 2330647 CAAATTTTCGTCAAGACCCTTACCGGCAAGACTATCACCCTAGAAGTCGAGTCGTCGGAC 2330588 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || || || ||||| |||||||| Sbjct 2330587 ACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAGCAG 2330528 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || |||||||| ||||| || || || | ||||| | || || ||| || Sbjct 2330527 CGCCTCATTTTTGCCGGAAAGCAGCTGGAGGACGGCCGCACTCTCTCTGACTACAACATC 2330468 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| || ||||| |||| || Sbjct 2330467 CAGAAAGAGAGCACCCTGCA-CTTGGTT 2330441 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || |||||||| ||||| || || ||| Sbjct 2330875 CAAATTTTCGTCAAGACCCTTACCGGCAAGACTATCACCCTAGAGGTCGAGTCGTCGGAC 2330816 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| ||||| || || || || ||||| || ||||| Sbjct 2330815 ACTATCGATAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATTCCTCCAGATCAGCAG 2330756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || || || ||||| | || ||| | || || ||| | Sbjct 2330755 CGCCTTATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTTCTGACTACAACATT 2330696 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||| || || || ||||| Sbjct 2330695 CAGAAAGAAAGCACCCTTCACCTTGT 2330670 >seq17 Length=408792 Score = 89.7 bits (98), Expect = 1e-12 Identities = 183/268 (68%), Gaps = 7/268 (3%) Strand=Plus/Plus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182 |||| ||| ||||||||||| |||||| | ||| ||||| || ||||| | Sbjct 105633 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATAAAAGGGTTA 105692 Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCA-CGACCTT 214241 || |||| || || | || ||| || |||||| | |||||||| | |||| Sbjct 105693 CCAGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTGATCGAC--- 105749 Query 214242 TTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGAC 214301 ||| | | ||||||| ||||| || || || |||| ||| || || |||||||| Sbjct 105750 -TTGCCGCGTCCCTCGGCCTCGTATTTCTCGTACAGAGCCTCGAACTCATCGCCGTAGAC 105808 Query 214302 ATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT-GA 214360 |||| | ||||| || ||| |||||||| | | | |||| | || || || || || Sbjct 105809 ATCAGCCAGACCAGGGCACTCATTGGGGCACATTAAAGTCCAGTCGCCGTT-TCTCTCGA 105867 Query 214361 CTCTTTTCATGAAAAGGTCGGAAGTCCA 214388 ||| |||||||| || || | | |||| Sbjct 105868 CTCGCTTCATGAAGAGATCAGGAATCCA 105895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730629356178