Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomassariella_20vexata_20[genbank_20GCA_5F002105095.1_202017-04- 20] 37 sequences; 44,711,451 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq23 172 5e-38 seq37 129 5e-25 seq34 127 2e-24 >seq23 Length=3455761 Score = 172 bits (190), Expect = 5e-38 Identities = 167/212 (79%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||| || |||||||||||||| ||||| ||||||||||| ||||| | || || Sbjct 479373 CACGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTC 479432 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||||||| |||| ||||| ||||||| ||| | || ||||||||| Sbjct 479433 GAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 479492 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || ||| || | | | |||||||||||||||||||| | || || || | Sbjct 479493 GATCTTGGACTT-GACATTGTCAATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCT 479551 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| || ||||| ||||| ||||||||| Sbjct 479552 TGCCCGTGAGGGTCTTCACGAAGATCTGCATG 479583 >seq37 Length=2347807 Score = 129 bits (142), Expect = 5e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || ||||| || ||||||||||| ||||| || Sbjct 2330652 CCACCGCGGAGACGGAGGACAAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCAGAA 2330711 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| || || || |||||||| || || | ||| Sbjct 2330712 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGATCTGGAGGA 2330771 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || ||||| | | || | |||||| |||||| | Sbjct 2330772 ATGCCCTCCTTATCCTGGATCTTCGACTTCACATTATCG--ATAGTGTCCGACGACTCGA 2330829 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| |||||||| ||||| Sbjct 2330830 CCTCTAGGGTGATAGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 2330878 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || ||||| || ||||||||||| |||||||| Sbjct 2330880 CCACCGCGGAGACGGAGGACAAGGTGAAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGAA 2330939 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| || || || |||||||| ||||| | ||| Sbjct 2330940 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGGCGCTGCTGGTCTGGGGGG 2330999 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | ||| | || | | ||| | | | || || ||||| || Sbjct 2331000 ATACCCTCCTTAT-CTTGAATCTTCGACTTGACGTTGTCAATGGTATCAGAGGACTCGAC 2331058 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || || || || || ||||| ||||||||| Sbjct 2331059 CTCGAGGGTAATGGTCTTGCCAGTGAGAGTTTTAACGAAGATCTGCATG 2331107 >seq34 Length=2752027 Score = 127 bits (140), Expect = 2e-24 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| || || || | || || ||||||||||| ||||| | Sbjct 472594 CCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 472535 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||| ||||| | ||||| || |||||||||| ||| || ||| || | Sbjct 472534 TCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 472475 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | || ||| ||||||||||| | || || || || |||||||| ||||| || Sbjct 472474 CG--ATGGTATCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 472417 Query 41851 GAA 41853 ||| Sbjct 472416 GAA 472414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303786184400