Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq18 102 8e-17 >seq18 Length=888533 Score = 102 bits (112), Expect = 8e-17 Identities = 315/479 (66%), Gaps = 10/479 (2%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 |||||||| | ||| || || ||||| ||||| || ||||| |||| || || |||||| Sbjct 234340 TGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCTAGCGAGATGTTCTCC 234399 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 ||||| || || || || || || | | || | || || || | | | Sbjct 234400 ATGAAGTCGAAGGGGTTGGTGGCATTGTAGACCTTGGTGTTGCCGAGAGCCAACAGCAGG 234459 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-CG 16854 | ||| || || || || || || |||||||| | | |||||| || | ||| || Sbjct 234460 CGATCGGCAACGAACTCAATGTACTGGCACATAAGGGTGGCGTTCATACCAAGAAGTGCG 234519 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-- 16912 | ||| |||| || |||| || |||||| || || || || | || || Sbjct 234520 CAGGGGA-GAGCCTCGCTCAAGAACTCTTGCTCAATTGTGACAGCCTCAGTGATGATGGC 234578 Query 16913 CTAG-CA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 || | || |||| || || || |||| |||| | || | || | ||| ||||||| Sbjct 234579 CTGGACAGACTCCTTGCTGGGGCGGT---TGTTGA-GAAGAGAGAAGAGCAGGCATGCGA 234634 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 |||| ||| | |||||||| | | ||| || ||||| || ||||||| || |||| Sbjct 234635 AATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCA 234694 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 || || || ||||| | |||||| || | || || || || ||||| || |||| Sbjct 234695 TCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAGATGCCCT 234754 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 | |||| ||||| |||| | || | |||| | || | || |||| | |||||| Sbjct 234755 CCACGGCAGCAAATGCGACGAGACGGTTGGCGAAAGTAGAGTTCTTGTCAGAGATCCAT 234813 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 ||| | || || || |||||||| || || | |||||||| ||||||||||| Sbjct 234940 TCGCTGATGTATGTGTCGATGAGCAGAGAATATGTCTCGGAGTGGATGTTCTCCATCATG 234999 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 ||||| || ||||| |||||||| || || | ||||| ||||| || | || || || Sbjct 235000 ATCTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTCGCCGGAAAAGCGCTCG 235059 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | || || ||||| || ||||||||| || ||||| || || Sbjct 235060 ACGAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCGAAGAAGGC 235103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545153616920