Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq18 102 8e-17
>seq18
Length=888533
Score = 102 bits (112), Expect = 8e-17
Identities = 315/479 (66%), Gaps = 10/479 (2%)
Strand=Plus/Plus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|||||||| | ||| || || ||||| ||||| || ||||| |||| || || ||||||
Sbjct 234340 TGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCTAGCGAGATGTTCTCC 234399
Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795
||||| || || || || || || | | || | || || || | | |
Sbjct 234400 ATGAAGTCGAAGGGGTTGGTGGCATTGTAGACCTTGGTGTTGCCGAGAGCCAACAGCAGG 234459
Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-CG 16854
| ||| || || || || || || |||||||| | | |||||| || | ||| ||
Sbjct 234460 CGATCGGCAACGAACTCAATGTACTGGCACATAAGGGTGGCGTTCATACCAAGAAGTGCG 234519
Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-- 16912
| ||| |||| || |||| || |||||| || || || || | || ||
Sbjct 234520 CAGGGGA-GAGCCTCGCTCAAGAACTCTTGCTCAATTGTGACAGCCTCAGTGATGATGGC 234578
Query 16913 CTAG-CA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970
|| | || |||| || || || |||| |||| | || | || | ||| |||||||
Sbjct 234579 CTGGACAGACTCCTTGCTGGGGCGGT---TGTTGA-GAAGAGAGAAGAGCAGGCATGCGA 234634
Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030
|||| ||| | |||||||| | | ||| || ||||| || ||||||| || ||||
Sbjct 234635 AATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCA 234694
Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090
|| || || ||||| | |||||| || | || || || || ||||| || ||||
Sbjct 234695 TCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAGATGCCCT 234754
Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149
| |||| ||||| |||| | || | |||| | || | || |||| | ||||||
Sbjct 234755 CCACGGCAGCAAATGCGACGAGACGGTTGGCGAAAGTAGAGTTCTTGTCAGAGATCCAT 234813
Score = 89.7 bits (98), Expect = 5e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287
||| | || || || |||||||| || || | |||||||| |||||||||||
Sbjct 234940 TCGCTGATGTATGTGTCGATGAGCAGAGAATATGTCTCGGAGTGGATGTTCTCCATCATG 234999
Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347
||||| || ||||| |||||||| || || | ||||| ||||| || | || || ||
Sbjct 235000 ATCTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTCGCCGGAAAAGCGCTCG 235059
Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
| || || ||||| || ||||||||| || ||||| || ||
Sbjct 235060 ACGAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCGAAGAAGGC 235103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545153616920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |