Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq18 187 3e-42
seq6 116 4e-21
seq16 109 6e-19
seq29 102 8e-17
>seq18
Length=888533
Score = 187 bits (206), Expect = 3e-42
Identities = 213/283 (75%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||| |||||||| ||||||||||| || |||||||| | ||||| | || || |||
Sbjct 235229 TGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAAATTGATCTTTCC 235170
Query 116699 AAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
||||| | | | |||||| | ||| ||||||||| |||||||| |||||| ||
Sbjct 235169 AAGGATCTCCAT-GACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCCCA 235111
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814
||| || ||||| ||||| ||| ||||||||| ||||||||||| || |||||||| ||
Sbjct 235110 CGTCCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGAGCGCTT 235051
Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874
| || || || | ||||||| || ||||||||||| || |||||| |||||
Sbjct 235050 TTCCGGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAGATCATGATGGA 234991
Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||| | ||||| || | ||||| ||||||||||| |||
Sbjct 234990 GAACATCCACTCCGAGACATATTCTCTGCTCATCGACACATAC 234948
Score = 140 bits (154), Expect = 3e-28
Identities = 304/450 (68%), Gaps = 4/450 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| || ||||| || || |||||| | | || | | | |||| | | || |
Sbjct 234835 AGAAGGCTGATTGGGCCCTTCGATGGATCTCTGACAAGAACTCTACTTTCGCCAACCGTC 234776
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || || || || ||||| |||||| ||||||| ||| || || |||| ||||
Sbjct 234775 TCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTTTGCGTCCATCTTTT 234716
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| || || || ||||| || ||||| ||| |||||||||||||||| | |
Sbjct 234715 GGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAACGAGCTCATCTCCCGCG 234656
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||| ||||| || || || || |||| ||| | | | | || || |
Sbjct 234655 ACGAGGGTATGCATACTGATTTCGCATGCCTGCTCTTCTCTCTTCTCAACAACCGCCCCA 234596
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| || | ||| || ||| |||| || || ||| | || ||||| ||| | |
Sbjct 234595 GCAAGGAGTCTGTCCAGGCCATCATCACTGAGGCTGTCACAATTGAGCAAGAGTTCTTGA 234536
Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
||| || || || |||| || || || | || || | | |||| || |||||
Sbjct 234535 GCGAGGCTCT-CCCCTGCGCACTTCTTGGTATGAA-CGCCACCCTTATGTGCCAGTACAT 234478
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
|||||||| ||||| | |||||| | | || | | | ||||| |||||| | |
Sbjct 234477 TGAGTTCGTTGCCGATCGCCTGCTGTTGGCTCTCGGCAACACCAAGGTCTACAATGCCAC 234418
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429
|||||| | ||||| ||| | ||||||
Sbjct 234417 CAACCCCTTCGACTTCATGGAGAACATCTC 234388
>seq6
Length=1708680
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| || ||||||||| | || ||||| | |
Sbjct 771632 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 771573
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | ||||| || || | || || |||||||| || | ||||||
Sbjct 771572 GATACTATCGACAATGTCAAGAGCAAGATCCAGGATAAGGAGGGCATTCCTCCTGACCAG 771513
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 771512 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTGTCGGACTACAAC 771453
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||| | || || ||||| ||
Sbjct 771452 ATCCAGAAGGAATCGACCCTCCATCTCGT 771424
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||||||| |||| |||||| | |
Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| ||||| | ||||| ||||| || ||| | || ||
Sbjct 771344 GATACCATTGATAACG-TAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCA 771286
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || ||||| || |||| ||||| ||| ||||||||
Sbjct 771285 GCAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAA 771226
Query 40869 CATCCAGAAGGA 40880
||| ||||||||
Sbjct 771225 CATTCAGAAGGA 771214
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || ||||| | || || || | |
Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || |||| || || ||||||||||| | || ||
Sbjct 771116 GACACCATCGACAACG-TAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCA 771058
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| |||||| |||||||| || |||| ||||| || ||||||||
Sbjct 771057 GCAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAA 770998
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| |||||| |||| ||||| | ||| | || || | |||||
Sbjct 770997 TATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGG 770950
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||||||||| |||||||| |||| || || || | |||| | | |||| |||||
Sbjct 771838 TCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACG-TCAAG 771780
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | || || ||||||||||| | |||||||| || | |||| ||| |||
Sbjct 771779 AGCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGC 771720
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| ||||||||| ||| |||||||| || |||||| | || ||
Sbjct 771719 AAGCAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTC 771660
Query 40891 CATCTAGT 40898
|| || ||
Sbjct 771659 CACCTCGT 771652
>seq16
Length=934283
Score = 109 bits (120), Expect = 6e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|| || |||||||| ||| |||||||||| || || |||| ||| ||||| ||||| ||
Sbjct 373876 GATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 373817
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||| ||||| ||| |||||||||||||||||||||| | ||||| ||
Sbjct 373816 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACGCTCCA 373767
>seq29
Length=430389
Score = 102 bits (112), Expect = 8e-17
Identities = 93/116 (80%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 40778 TTCTC-GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836
||||| ||||| ||||| || ||| | |||||||| || || |||| ||| ||||| |||
Sbjct 67469 TTCTCAGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAG 67528
Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || |||| || |||||| |||||||||||||||||||||| | || || ||
Sbjct 67529 CTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 67584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218755623440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |