Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 187 3e-42 seq6 116 4e-21 seq16 109 6e-19 seq29 102 8e-17 >seq18 Length=888533 Score = 187 bits (206), Expect = 3e-42 Identities = 213/283 (75%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||| | ||||| | || || ||| Sbjct 235229 TGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAAATTGATCTTTCC 235170 Query 116699 AAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||||| | | | |||||| | ||| ||||||||| |||||||| |||||| || Sbjct 235169 AAGGATCTCCAT-GACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCCCA 235111 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||| ||||| ||| ||||||||| ||||||||||| || |||||||| || Sbjct 235110 CGTCCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGAGCGCTT 235051 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || || | ||||||| || ||||||||||| || |||||| ||||| Sbjct 235050 TTCCGGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAGATCATGATGGA 234991 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||| | ||||| || | ||||| ||||||||||| ||| Sbjct 234990 GAACATCCACTCCGAGACATATTCTCTGCTCATCGACACATAC 234948 Score = 140 bits (154), Expect = 3e-28 Identities = 304/450 (68%), Gaps = 4/450 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| || || |||||| | | || | | | |||| | | || | Sbjct 234835 AGAAGGCTGATTGGGCCCTTCGATGGATCTCTGACAAGAACTCTACTTTCGCCAACCGTC 234776 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || || || ||||| |||||| ||||||| ||| || || |||| |||| Sbjct 234775 TCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTTTGCGTCCATCTTTT 234716 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || || || ||||| || ||||| ||| |||||||||||||||| | | Sbjct 234715 GGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAACGAGCTCATCTCCCGCG 234656 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||| ||||| || || || || |||| ||| | | | | || || | Sbjct 234655 ACGAGGGTATGCATACTGATTTCGCATGCCTGCTCTTCTCTCTTCTCAACAACCGCCCCA 234596 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | ||| || ||| |||| || || ||| | || ||||| ||| | | Sbjct 234595 GCAAGGAGTCTGTCCAGGCCATCATCACTGAGGCTGTCACAATTGAGCAAGAGTTCTTGA 234536 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 ||| || || || |||| || || || | || || | | |||| || ||||| Sbjct 234535 GCGAGGCTCT-CCCCTGCGCACTTCTTGGTATGAA-CGCCACCCTTATGTGCCAGTACAT 234478 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| ||||| | |||||| | | || | | | ||||| |||||| | | Sbjct 234477 TGAGTTCGTTGCCGATCGCCTGCTGTTGGCTCTCGGCAACACCAAGGTCTACAATGCCAC 234418 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||| | ||||| ||| | |||||| Sbjct 234417 CAACCCCTTCGACTTCATGGAGAACATCTC 234388 >seq6 Length=1708680 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| || ||||||||| | || ||||| | | Sbjct 771632 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 771573 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | || || |||||||| || | |||||| Sbjct 771572 GATACTATCGACAATGTCAAGAGCAAGATCCAGGATAAGGAGGGCATTCCTCCTGACCAG 771513 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 771512 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTGTCGGACTACAAC 771453 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 771452 ATCCAGAAGGAATCGACCCTCCATCTCGT 771424 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| |||| |||||| | | Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| ||||| | ||||| ||||| || ||| | || || Sbjct 771344 GATACCATTGATAACG-TAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCA 771286 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||||| || |||| ||||| ||| |||||||| Sbjct 771285 GCAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAA 771226 Query 40869 CATCCAGAAGGA 40880 ||| |||||||| Sbjct 771225 CATTCAGAAGGA 771214 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | || || || | | Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| || || ||||||||||| | || || Sbjct 771116 GACACCATCGACAACG-TAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCA 771058 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||| |||||||| || |||| ||||| || |||||||| Sbjct 771057 GCAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAA 770998 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| |||| ||||| | ||| | || || | ||||| Sbjct 770997 TATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGG 770950 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||||||||| |||||||| |||| || || || | |||| | | |||| ||||| Sbjct 771838 TCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACG-TCAAG 771780 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || ||||||||||| | |||||||| || | |||| ||| ||| Sbjct 771779 AGCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGC 771720 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| ||||||||| ||| |||||||| || |||||| | || || Sbjct 771719 AAGCAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTC 771660 Query 40891 CATCTAGT 40898 || || || Sbjct 771659 CACCTCGT 771652 >seq16 Length=934283 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||| ||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 373876 GATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 373817 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||| ||| |||||||||||||||||||||| | ||||| || Sbjct 373816 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACGCTCCA 373767 >seq29 Length=430389 Score = 102 bits (112), Expect = 8e-17 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 40778 TTCTC-GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 ||||| ||||| ||||| || ||| | |||||||| || || |||| ||| ||||| ||| Sbjct 67469 TTCTCAGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAG 67528 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || |||| || |||||| |||||||||||||||||||||| | || || || Sbjct 67529 CTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCA 67584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218755623440