Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 seq16 93.3 4e-14 seq29 87.8 2e-12 >seq6 Length=1708680 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| ||||| || ||||| || | |||||| ||||| Sbjct 770967 CACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGAAAGAGTGCGACCGTCCTC 771026 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||||| || ||| |||| || ||||||||||||||||| ||||||||||| ||| Sbjct 771027 GAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCTTG 771086 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | ||| ||||| | || | || || Sbjct 771087 AATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCTAGAGTGATTGTCTT 771146 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 771147 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||| || || ||||||||||| || | |||||| |||||| Sbjct 771196 ACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 771255 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | ||||||||||| || || || |||||||||||| Sbjct 771256 AGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGG 771315 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||| || | |||||||||| ||| | || || Sbjct 771316 ATTTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGACCTCGAGGGTGATGGTCTTT 771375 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || || ||||| Sbjct 771376 CCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || || || |||||||| || || |||||| |||||| ||||| Sbjct 771430 TGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCCTCAAGCTGC 771489 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | |||||||| || ||||| ||||||||||| || || || Sbjct 771490 TTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGGATCTTG 771549 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| || |||| ||||||||| | ||| | || || || || Sbjct 771550 CTCTTGACATTGTCGATAGTATCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTG 771609 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||| Sbjct 771610 AGGGTTTTGACGAAGATCTGCAT 771632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 771657 GTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCTTCGAGCTG 771716 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| | |||||||| || ||||| ||||||||||| || || || Sbjct 771717 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTT 771776 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| | ||| ||||||| || | || ||||| || Sbjct 771777 GCTCTTGACGTTGTCGATAGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 771836 >seq16 Length=934283 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | |||||| |||||| Sbjct 373761 ACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 373820 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || || ||| |||| || |||||||| || || || ||||||||||| || Sbjct 373821 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATC 373876 >seq29 Length=430389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | || || |||||| Sbjct 67590 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 67531 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||| || || ||| |||| || |||||||| || || || || ||||||||||||| Sbjct 67530 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCTG 67473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830035175748