Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq29 82.4 5e-11 >seq6 Length=1708680 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| ||||| || | || || | ||||||||| ||||| Sbjct 771441 TTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAA 771500 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| || | || |||||| || ||||| ||| | || Sbjct 771501 GATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGGATCTTGCTCTTGACATT 771560 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||| | || ||||| |||| |||||||| || || ||||| ||||| || Sbjct 771561 GTCGATAGTATCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGAC 771620 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 771621 GAAGATCTGCAT 771632 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| ||||| ||||||||||| || || || |||| Sbjct 771193 AGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCC 771252 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| |||||||| || | |||||||| || ||| | | ||||||||| Sbjct 771253 TCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 771312 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||||| | | || | ||| | ||||||||| || | |||||||| Sbjct 771313 TGGATTTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGACCTCGAGGGTGATGGTC 771372 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||| || || ||||| ||||| Sbjct 771373 TTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| ||||| | ||||||| ||| | ||| || || || || |||||||| || Sbjct 770949 TCCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGA 771008 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||| || || ||||| || || |||||||| ||| || Sbjct 771009 AAGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGG 771068 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||||| | | | || | || | ||| || || Sbjct 771069 GATGCCCTCCTTATCTTGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 771128 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || |||||||| | || || || ||||||||||| Sbjct 771129 CTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 >seq29 Length=430389 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || |||| |||| || | ||||||||| ||||| Sbjct 67572 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 67513 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || || ||||||||||| ||| | | ||||||||| Sbjct 67512 ATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 67475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071728316640