Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq17 342 5e-89 seq18 134 1e-26 >seq17 Length=926260 Score = 342 bits (378), Expect = 5e-89 Identities = 1207/1862 (65%), Gaps = 56/1862 (3%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || || || |||||||||||||| ||||| | |||||| | ||| || |||| Sbjct 105659 TGGTACGGAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCG 105718 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 |||| | || || | | ||| | ||||| | |||| |||||| |||||||| Sbjct 105719 ACGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGA 105778 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || || ||||| | || | || ||| || |||||||| || | Sbjct 105779 TGAAGGCACCACGGTCAGCAGCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAG 105838 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTA 22381 ||||||| || | || ||||| || || | | || | | |||| ||| || Sbjct 105839 TCTTGTAAAGAGTCTTGGTCTCTTCAGGAAT-GTTGGGAATGCGTTGGATGGAGCCACC- 105896 Query 22382 TTGTGTA-TGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440 || || | |||| ||| || || | || ||||| ||| || || || ||| || Sbjct 105897 TTCTGCAATGATACGATTCTTCATGTTCTCAGACCACAGACCCATATCGACCAGATCCTT 105956 Query 22441 GACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATG 22498 | ||| ||| |||| || ||||| ||||| || | | || ||||| ||| ||| Sbjct 105957 AAGCAGCCATG--GGTTGACGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATG 106014 Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558 || |||||| | || || || | || |||||||| || ||||||| ||| || || || Sbjct 106015 TTCGATGTGTATGGCTCAAAGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTT 106074 Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGC 22618 ||||| || || | || || ||||| | | || |||| | ||| || ||| || Sbjct 106075 GGCATGGGTGCAATCAAAAGAGAGTTGCGAACACCATGCTGAGCAATCTTCTCCTTCAGG 106134 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 | ||||||||||||||| | || |||||||| |||||| ||||| || | | Sbjct 106135 GAGGCCCAGTCCCACAGATCAGTAGGAGTCACATT---CCACATGTCGTACTGAAGAATA 106191 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG 22738 || || | | || || ||||| || | ||| || || | | ||| | || Sbjct 106192 CCCTGAGACACTGGCGAACCCTCGTAGGTCTGGTATGGGCCGAGTTCCTTGGCGATGTCA 106251 Query 22739 CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA-ATTC--G 22795 || | | ||| ||| || || || |||||||| | |||| | ||| | Sbjct 106252 CAAGATGAAGTGAGGGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTG 106311 Query 22796 GCGGC-GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 || | |||||| ||| | |||| |||| || ||| || || || | ||| || Sbjct 106312 GCCTCTGGCGAC----TCGAAGGGCAAGCGCAGAGCCAGGAAAGCATCAGCAAGACCTTG 106367 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCA----GATTCGACACTTTTGCCTCGGGCAAAG 22910 || || || || || || | || | | | |||| |||||| | | Sbjct 106368 GACACCCATGCCAATAGGCCTGTGGCGGAAGTTGCTGCGAC----GTGCCTCCTCGACTG 106423 Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970 | || || ||||| | ||||||| || | || |||| | || | Sbjct 106424 GGTAGTGGTTGACCTCGATGATCTTGTTCAAATTGCGAGTGACAACCTGGGTGACCTCGT 106483 Query 22971 NNNNNNNNTCAAAGTCGTAAACGCC-CGATTGTA--CAACAAACTTGTTGACGGCGATCG 23027 | |||||| | |||| || ||||| ||||||| | || || || | Sbjct 106484 GAAGCTTTTGGAAGTCGAACTCGCCACGCTTGTAATCAACAAA--GGATG--GGAGAGCA 106539 Query 23028 AGGCAAG----ATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTA 23083 ||| ||| |||||| || ||||||||||| | |||||||| | || || || Sbjct 106540 AGGGAAGCAAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTG 106599 Query 23084 CATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || || ||| | || || |||| || |||||||||| || | ||||| | Sbjct 106600 CAGAGGTTGGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCG 106659 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || | || |||||| ||||| ||||| || || ||| Sbjct 106660 TCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAA 106719 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCT--TCCTCGTACTTTTGGTACA 23261 | |||| || | || || |||| ||| |||| | |||||| ||||| | Sbjct 106720 AGCTTCTGGGCACGGAC-GGTTTCACG-ACCACGATTCTCCTTCTCGTAGCGGTGGTAGA 106777 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 | | || || || |||||||| ||||| || || || | | | ||||| | | Sbjct 106778 GCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACA 106837 Query 23322 GACTCCACATTGAGTCATT---TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || |||| | |||| || ||||| |||| || ||||| || ||||| | || Sbjct 106838 GCGTC--CATTCA-CCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAG 106894 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || || || ||||| ||||| || |||||| |||||| ||| || | | Sbjct 106895 CGTAGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGA 106954 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 || | || || || || ||||| ||||| || || | |||||| || || || | ||| | Sbjct 106955 AGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGT 107014 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 |||| ||||| || |||||||| || ||||||||||| || | ||||| || | ||||| Sbjct 107015 TGCCACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGAC 107074 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 | || || | ||| ||| | | || ||| | || || | || |||| Sbjct 107075 CATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGT 107134 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 || || || || || | | || || |||| || || ||||| |||||||||| Sbjct 107135 TGAGGCCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGA 107194 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 | || || |||||||||||||| | | | | ||| || || ||||| || | | Sbjct 107195 TACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATG 107254 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGA 23797 | || | || ||| || ||||| |||||| |||||||| | ||||| ||| Sbjct 107255 GAGTGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG- 107313 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 | |||||| || ||||| || ||||| | ||||| || |||| ||||| |||||| Sbjct 107314 TCGTACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACACGCATC 107373 Query 23858 ATCATGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGT 23914 | ||||| ||| || | |||| ||| | |||||| || || || ||||| || Sbjct 107374 AGCATGTGTTGTGGACGCTCGGCAACCTT---GCCGTTGATGCGGAGGAGGTATGAGCGC 107430 Query 23915 TGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAA 23974 | | || || || || || | | ||||| |||||||| |||| || |||||||| Sbjct 107431 TCGAGGGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATGGCCGAG 107490 Query 23975 TT 23976 || Sbjct 107491 TT 107492 >seq18 Length=888533 Score = 134 bits (148), Expect = 1e-26 Identities = 231/333 (69%), Gaps = 8/333 (2%) Strand=Plus/Minus Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 || |||||| | | || |||| || || ||||| || || || ||||| ||| | Sbjct 234791 ACTTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCC 234732 Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 |||||| | || |||||| | ||||| || || |||||||| || ||||| || |||| Sbjct 234731 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAAC 234672 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || |||||||||||| | ||||||||||| || ||||| | | ||||| Sbjct 234671 GAGCTCATCTCCCGCGACGAGGGTATGCATACTGATTTCGCATGCCTGCTCTTCTCTC-- 234614 Query 58140 ATTGTCAATAAACCGACGCGGGATCGCATCT----TGGACATTATCACCGAGGCGGTCGC 58195 || |||| ||||| | | | | | ||| || ||| ||||| ||||| ||| | Sbjct 234613 -TTCTCAA-CAACCGCCCCAGCAAGGAGTCTGTCCAGGCCATCATCACTGAGGCTGTCAC 234556 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 || || | ||||| | | ||| || || || || | || ||||||||| Sbjct 234555 AATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGTATGAACGCCAC 234496 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 | |||| ||||||||||||| |||||||| Sbjct 234495 CCTTATGTGCCAGTACATTGAGTTCGTTGCCGA 234463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766015526480