Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq17 143 3e-29
seq18 91.5 2e-13
>seq17
Length=926260
Score = 143 bits (158), Expect = 3e-29
Identities = 316/473 (67%), Gaps = 3/473 (1%)
Strand=Plus/Plus
Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093
|||| ||||| |||||||| || ||||| || |||| | ||||| || ||||||||
Sbjct 105619 TCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTACATG 105678
Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153
||||| || ||||| || |||| || ||| ||||| ||| | ||| | |
Sbjct 105679 CCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCATAGTA 105738
Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213
|| || || ||||| || | ||| ||| |||||||||||||| || | ||| |||
Sbjct 105739 GGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 105798
Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273
||||| | ||||| || || | |||||||||| ||| || |||| ||| |
Sbjct 105799 GCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCTTGGTC 105858
Query 62274 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330
||||| |||| ||| | | | || ||||| ||||| ||| | || || | ||||||
Sbjct 105859 TCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGATTCTTC 105918
Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390
|| | ||| ||| | | ||| | | | |||| || ||||| || |||
Sbjct 105919 ATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGACGACT 105978
Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450
||||| || |||| | || | || | ||| || || || || || || | ||
Sbjct 105979 TGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAAAGCAC 106038
Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503
|| || ||||| | || |||| || |||||||| ||||| ||||| | |||
Sbjct 106039 TCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAA 106091
Score = 118 bits (130), Expect = 1e-21
Identities = 396/610 (65%), Gaps = 10/610 (2%)
Strand=Plus/Plus
Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
|||||||| || || |||||| | | | | |||| |||| ||||| | || || |
Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842
Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308
|| || || | || | || || ||||| |||||||| || ||||| | ||| ||
Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902
Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368
||||| | | | || || || || ||||| | || ||||| | |
Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962
Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428
| ||| | ||||| || || | || ||||| | | || || || ||||| || |||
Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022
Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488
|| || | ||| | || ||||| || || || | | ||| ||||| | ||| || ||
Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082
Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGAC 63546
| || ||||| || ||| ||| || ||||||| ||| | | |||| | |
Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140
Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606
| || || || || | || ||||| || || || || | ||||| ||||| || |
Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200
Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
| ||||| || || |||||| || || || ||| ||||| || | | ||| |
Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGGAGTGC 107260
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTAC 63725
| || || || | || || || ||||| ||||| | || | || | |||| | ||||
Sbjct 107261 CTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGTAC 107319
Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACA 63783
|||||||| || || || || |||| ||||| || || ||||||||||| | ||
Sbjct 107320 GTCTCAATGGCCTTCTCGATGTC--ATTGCCGTGAATGCCGACAGCGACACGCATCAGCA 107377
Query 63784 TGTGCTGAGG 63793
|||| || ||
Sbjct 107378 TGTGTTGTGG 107387
>seq18
Length=888533
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
||||||||||| |||| ||||||||| | || | ||||| || || || ||
Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| || |||||||| || |||||||| ||||| || || || ||| ||||||
Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747
Query 33702 ATTCCTTCTACTGCAGCAAAGGC 33724
|| || || || |||||||| ||
Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817056782320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |