Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq17 140 4e-28
seq18 87.8 2e-12
>seq17
Length=926260
Score = 140 bits (154), Expect = 4e-28
Identities = 315/473 (67%), Gaps = 3/473 (1%)
Strand=Plus/Plus
Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886
|||| ||||| |||||||| || ||||| || |||| | ||||| || ||||||||
Sbjct 105619 TCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTACATG 105678
Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946
||||| || ||||| || |||| || ||| ||||| ||| | ||| | |
Sbjct 105679 CCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCATAGTA 105738
Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006
|| || || ||||| || | ||| ||| |||||||||||||| || | ||| |||
Sbjct 105739 GGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 105798
Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 65066
||||| | ||||| || || | |||||||||| ||| || |||| ||| |
Sbjct 105799 GCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCTTGGTC 105858
Query 65067 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123
||||| |||| ||| | | | || ||||| ||||| ||||| || || | ||||||
Sbjct 105859 TCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGATTCTTC 105918
Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183
|| | ||| ||| | | ||| | | | |||| || || || || |||
Sbjct 105919 ATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGACGACT 105978
Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243
|| || || |||| | || | || | ||| || || || || || || | ||
Sbjct 105979 TGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAAAGCAC 106038
Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 65296
|| || ||||| | || |||| || |||||||| ||||| ||||| | |||
Sbjct 106039 TCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAA 106091
Score = 107 bits (118), Expect = 3e-18
Identities = 396/612 (65%), Gaps = 14/612 (2%)
Strand=Plus/Plus
Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041
|||||||| || || |||||| | | | |||||| |||| ||||| | || || |
Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842
Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101
|| || || | || | || || ||||| |||||||| || ||||| | ||| ||
Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902
Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161
| ||| | | | || || || || ||||| | || ||||| | |
Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962
Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221
| ||| ||||| || || | || ||||| | | || || || ||||| || |||
Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022
Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281
|| || | ||| | || ||||| || || || | | ||| ||||| | |||||| ||
Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082
Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TTGATAGAC 66339
|| || ||||| || ||| ||| || | ||||| ||| | | |||| | |
Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140
Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399
| || || || || | || ||||| || || || || | || || ||||| || |
Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200
Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGT 66457
| || || || || |||||| || || || ||| ||||| || | || | |||
Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGG--AGT 107258
Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGT 66516
|| || || || | || || || ||||| ||||| | || | || | |||| | ||
Sbjct 107259 GCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGT 107317
Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAA 66574
|||||||||| || || || || |||| ||||| || || ||||||||||| |
Sbjct 107318 ACGTCTCAATGGCCTTCTCGATGTC--ATTGCCGTGAATGCCGACAGCGACACGCATCAG 107375
Query 66575 CATGTGCTGAGG 66586
|||||| || ||
Sbjct 107376 CATGTGTTGTGG 107387
>seq18
Length=888533
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217
||||||||||| || | ||||||||| | || | |||||||| || || ||
Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687
Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277
|| ||||| || |||||||| || |||||||| ||||||||||| || || |||||
Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747
Query 36278 ATTCCTTCTACTGCCGCAAAGGC 36300
|| || || || || ||||| ||
Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172232325960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |