Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq17 154 2e-32
seq18 87.8 2e-12
>seq17
Length=926260
Score = 154 bits (170), Expect = 2e-32
Identities = 363/542 (67%), Gaps = 7/542 (1%)
Strand=Plus/Plus
Query 70785 TTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTA 70844
|| ||||| ||||| || || || || |||| || ||||| | ||||| || |||||
Sbjct 105615 TTCTTCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTA 105674
Query 70845 CATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT 70903
|||||| || || ||||| || |||| || ||| ||||| ||| | ||| ||
Sbjct 105675 CATGCCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCAT 105734
Query 70904 AGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGT 70963
|| |||| || ||||| || || | |||||| |||||||||||||| || | ||
Sbjct 105735 AG-TAGGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGT 105793
Query 70964 CTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCT 71023
| |||||||| | ||||| || || | |||||||||| ||| || |||| ||
Sbjct 105794 CAGCAGCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCT 105853
Query 71024 TAATATCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCAATAATCCTAT 71080
| | ||||| |||| ||| | | | || ||||| ||||| |||||||| || | ||
Sbjct 105854 TGGTCTCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGAT 105913
Query 71081 TTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAA 71140
| || || | ||| ||| | | ||| | | | |||| || || || |
Sbjct 105914 TCTTCATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGA 105973
Query 71141 CTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCA 71200
| ||||| || || |||| | || | || | ||| || || || || || || |
Sbjct 105974 CGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAA 106033
Query 71201 CTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260
|||| || ||||| | || |||| || |||||||| ||||| ||||| | ||| |
Sbjct 106034 AGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAAAA 106093
Query 71261 GACTATTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319
|| || | || |||||| ||| | || || || || || || |||| | ||| |||
Sbjct 106094 GAGAGTTGCGAACACCATGCTGAGC-AATCTTCTCCTTCAGGGAGGCCCAGTCCCACAGA 106152
Query 71320 TC 71321
||
Sbjct 106153 TC 106154
Score = 125 bits (138), Expect = 1e-23
Identities = 400/612 (65%), Gaps = 14/612 (2%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
|||||||| || || || ||| | | | |||||| ||||| ||||| | || | |
Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|| || |||| || | || || ||||| |||||||| || ||||| | ||| ||
Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123
||||| | | | ||| || || || ||||| | || ||||| | |
Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962
Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183
| ||| | ||||| || || | || ||||| | | || || || ||||| || |||
Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022
Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243
|| || | ||| | || ||||| || || || | | ||| ||||| | |||||| ||
Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082
Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGAC 72301
| || ||||| || ||| ||| || ||||||| ||| ||| |||| | |
Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140
Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361
| || || || || | || ||||| || || || || | || || ||||| || |
Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200
Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGT 72419
| || || || || |||||| || || || ||| ||||| || | || | |||
Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGG--AGT 107258
Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGT 72478
|| || || || | || || || ||||| ||||| | || | |||| |||| | ||
Sbjct 107259 GCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGT 107317
Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAA 72536
|||||||||| || |||| || ||||| || || || || ||||||||||| |
Sbjct 107318 ACGTCTCAATGGC--CTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACACGCATCAG 107375
Query 72537 CATATGCTGAGG 72548
||| || || ||
Sbjct 107376 CATGTGTTGTGG 107387
>seq18
Length=888533
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
||||||||||| |||| |||||| || | || | |||||||| || || ||
Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|| ||||| || |||||||| || |||||||| || |||||||| || || ||||||
Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747
Query 42185 ATTCCTTCTACTGCCGCAAAGGC 42207
|| || || || || ||||| ||
Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138621142440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |