Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17 154 2e-32 seq18 87.8 2e-12 >seq17 Length=926260 Score = 154 bits (170), Expect = 2e-32 Identities = 363/542 (67%), Gaps = 7/542 (1%) Strand=Plus/Plus Query 70785 TTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTA 70844 || ||||| ||||| || || || || |||| || ||||| | ||||| || ||||| Sbjct 105615 TTCTTCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTA 105674 Query 70845 CATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-AT 70903 |||||| || || ||||| || |||| || ||| ||||| ||| | ||| || Sbjct 105675 CATGCCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCAT 105734 Query 70904 AGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGT 70963 || |||| || ||||| || || | |||||| |||||||||||||| || | || Sbjct 105735 AG-TAGGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGT 105793 Query 70964 CTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCT 71023 | |||||||| | ||||| || || | |||||||||| ||| || |||| || Sbjct 105794 CAGCAGCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCT 105853 Query 71024 TAATATCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCAATAATCCTAT 71080 | | ||||| |||| ||| | | | || ||||| ||||| |||||||| || | || Sbjct 105854 TGGTCTCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGAT 105913 Query 71081 TTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAA 71140 | || || | ||| ||| | | ||| | | | |||| || || || | Sbjct 105914 TCTTCATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGA 105973 Query 71141 CTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCA 71200 | ||||| || || |||| | || | || | ||| || || || || || || | Sbjct 105974 CGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAA 106033 Query 71201 CTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260 |||| || ||||| | || |||| || |||||||| ||||| ||||| | ||| | Sbjct 106034 AGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAAAA 106093 Query 71261 GACTATTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319 || || | || |||||| ||| | || || || || || || |||| | ||| ||| Sbjct 106094 GAGAGTTGCGAACACCATGCTGAGC-AATCTTCTCCTTCAGGGAGGCCCAGTCCCACAGA 106152 Query 71320 TC 71321 || Sbjct 106153 TC 106154 Score = 125 bits (138), Expect = 1e-23 Identities = 400/612 (65%), Gaps = 14/612 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 |||||||| || || || ||| | | | |||||| ||||| ||||| | || | | Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || || |||| || | || || ||||| |||||||| || ||||| | ||| || Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | | | ||| || || || ||||| | || ||||| | | Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | ||| | ||||| || || | || ||||| | | || || || ||||| || ||| Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | ||| | || ||||| || || || | | ||| ||||| | |||||| || Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGAC 72301 | || ||||| || ||| ||| || ||||||| ||| ||| |||| | | Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | || || || || | || ||||| || || || || | || || ||||| || | Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGT 72419 | || || || || |||||| || || || ||| ||||| || | || | ||| Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGG--AGT 107258 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGT 72478 || || || || | || || || ||||| ||||| | || | |||| |||| | || Sbjct 107259 GCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGT 107317 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAA 72536 |||||||||| || |||| || ||||| || || || || ||||||||||| | Sbjct 107318 ACGTCTCAATGGC--CTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACACGCATCAG 107375 Query 72537 CATATGCTGAGG 72548 ||| || || || Sbjct 107376 CATGTGTTGTGG 107387 >seq18 Length=888533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||||||||| |||| |||||| || | || | |||||||| || || || Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || |||||||| || |||||||| || |||||||| || || |||||| Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747 Query 42185 ATTCCTTCTACTGCCGCAAAGGC 42207 || || || || || ||||| || Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138621142440