Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 167 3e-36 seq17 116 5e-21 >seq18 Length=888533 Score = 167 bits (184), Expect = 3e-36 Identities = 569/884 (64%), Gaps = 61/884 (7%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| |||| ||||| ||||| | || || | ||||| ||| Sbjct 235229 TGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAAATTGATCTTTCC 235170 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| || | || ||| | | || |||| || ||||| || || || ||| Sbjct 235169 AAGGATCTCCATGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCCCAC 235110 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | |||||||| || | |||||| || || |||||||| || || || || || || Sbjct 235109 GTCCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGAG-CGCTT 235051 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 || || | || || |||| ||||| ||||| ||||| |||||||| || Sbjct 235050 TTCCGGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAGATCATGATGGA 234991 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||| | ||||| || | || ||| || || |||| ||||| |||| || ||| Sbjct 234990 GAACATCCACTCCGAGACATATTCTCTGCTCATCGACACATACATCAGCGAGCCCAGGCA 234931 Query 125318 ACG-----------TAAA-------------------------CACAT-GCTCTTTA--- 125337 ||| | || |||| || ||| | Sbjct 234930 ACGCCAGTACCTTTTCAATGCCATTGACAACAGTGAGTAGCCCCACAACGCGCTTGAGAG 234871 Query 125338 ACGC-----AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTG 125392 |||| | || || || || | || || || |||||| | |||| |||| || Sbjct 234870 ACGCGTCTAACGCGTCATAGTTCCCTGCATTCGCAAGAAGGCTGATTGGGCCCTTCGATG 234811 Query 125393 GATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGG 125452 |||| |||| | || ||| | | |||| || | || || ||||| || ||||| ||||| Sbjct 234810 GATCTCTGACAAGAACTCTACTTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGG 234751 Query 125453 CATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCC 125512 ||||||||| || |||||| |||||||||||||||||||||| || || ||||| Sbjct 234750 CATCTTCTTCAGCGGCTCCTTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCC 234691 Query 125513 CGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || ||||| | |||||| | || || || |||||||| | || ||| ||| Sbjct 234690 AGGTCTGACATTCTCCAACGAGCTCATCTCCCGCGACGAGGGTATGCATACTGA-TTTCG 234632 Query 125573 CATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT 125632 ||| | ||| | | || ||| || | | | | ||||| | || ||| Sbjct 234631 CATGC--CTG---CTCTTCTCTCT---TCTCAACAACCGCCCCAGCAAGGAGTCTGTCCA 234580 Query 125633 CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT 125692 ||| | || || || || | || || |||||||| | | ||| | || || | Sbjct 234579 GGCCATCATCACTGAGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCT-CCCCT 234521 Query 125693 CAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATC 125751 ||| | |||| |||||| || || |||||| ||||||| ||||| || || |||| Sbjct 234520 GCGCACTTCTTGGTATGAACGCCACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATC 234461 Query 125752 GTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811 | || |||| | | | |||| | ||||| |||| || ||||| || |||| Sbjct 234460 GCCTGCTGTTGGCTCTCGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCA 234401 Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || | ||| || |||| || ||||||||||| ||||||||| Sbjct 234400 TGGAGAACATCTCGCTAGCTGGCAAGACCAACTTCTTCGAGAAG 234357 >seq17 Length=926260 Score = 116 bits (128), Expect = 5e-21 Identities = 330/499 (66%), Gaps = 6/499 (1%) Strand=Plus/Minus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 |||| |||||| ||||| ||||| || || || || || | ||| |||| | || | Sbjct 107038 CACGTTACGTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGC 106979 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 | |||||||| || || || | ||| | || ||||||| ||| ||| ||||||| Sbjct 106978 CATGGCACGCCGATGTCTTCGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGG 106919 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041 || || | || | || || || | ||| | || ||| | ||||||||||||||| Sbjct 106918 TCCGCGCTCGTGATCTCTTCTACGCTTTGTGGATCCCCGATCTCTTCATGAAGCGCGTCC 106859 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | || ||| | |||| || | || ||| | | | || ||||| ||||| | Sbjct 106858 AAGAGAATGGTGAATGGACGCTGTTCTGTCCCAATGAGGCTCCTGGTCTTGCCGATGTTT 106799 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTA-CACGGCCTACGAGCAAGAGGGCCG-ATACGTGAG 97159 || || ||||| |||| || ||| | ||||||| | ||| || ||||| Sbjct 106798 ACGGTGATGAGTTCGAGGAGCTCTACCACCG-CTACGAGAAGGAGAATCGTGGTCGTGAA 106740 Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 || ||| ||| | |||| || ||| | ||||| | ||| ||| |||||||| | Sbjct 106739 AC-CGTCCGTGC-CCAGAAGCTTTGGTATGCCATTCTCGAGGCGCAGACCGAGACTGGTA 106682 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| ||||||||||| || || | || |||||||| || |||| | Sbjct 106681 ACCCTTTCATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGTA 106622 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 | ||| ||||||| || ||||| || || | |||||| | |||| |||||| || Sbjct 106621 CTATCCGAAGCTCCAACCTCTGCACTGAGATCATCGAGTACACTGCTCCTGACGAGGTGG 106562 Query 97339 CAGTTTGCGTTCTGGCATC 97357 | || ||| ||| || || Sbjct 106561 CTGTCTGCAATCTTGCTTC 106543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058560836440