Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq18 167 3e-36
seq17 116 5e-21
>seq18
Length=888533
Score = 167 bits (184), Expect = 3e-36
Identities = 569/884 (64%), Gaps = 61/884 (7%)
Strand=Plus/Minus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
||| |||||||||| ||||| |||| ||||| ||||| | || || | ||||| |||
Sbjct 235229 TGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAAATTGATCTTTCC 235170
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141
||||| || | || ||| | | || |||| || ||||| || || || |||
Sbjct 235169 AAGGATCTCCATGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCCCAC 235110
Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200
| | |||||||| || | |||||| || || |||||||| || || || || || ||
Sbjct 235109 GTCCTCGCCTTCTTCGCTGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGAG-CGCTT 235051
Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260
|| || | || || |||| ||||| ||||| ||||| |||||||| ||
Sbjct 235050 TTCCGGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAGATCATGATGGA 234991
Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317
|||| | ||||| || | || ||| || || |||| ||||| |||| || |||
Sbjct 234990 GAACATCCACTCCGAGACATATTCTCTGCTCATCGACACATACATCAGCGAGCCCAGGCA 234931
Query 125318 ACG-----------TAAA-------------------------CACAT-GCTCTTTA--- 125337
||| | || |||| || ||| |
Sbjct 234930 ACGCCAGTACCTTTTCAATGCCATTGACAACAGTGAGTAGCCCCACAACGCGCTTGAGAG 234871
Query 125338 ACGC-----AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTG 125392
|||| | || || || || | || || || |||||| | |||| |||| ||
Sbjct 234870 ACGCGTCTAACGCGTCATAGTTCCCTGCATTCGCAAGAAGGCTGATTGGGCCCTTCGATG 234811
Query 125393 GATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGG 125452
|||| |||| | || ||| | | |||| || | || || ||||| || ||||| |||||
Sbjct 234810 GATCTCTGACAAGAACTCTACTTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGG 234751
Query 125453 CATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCC 125512
||||||||| || |||||| |||||||||||||||||||||| || || |||||
Sbjct 234750 CATCTTCTTCAGCGGCTCCTTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCC 234691
Query 125513 CGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572
|| ||||| | |||||| | || || || |||||||| | || ||| |||
Sbjct 234690 AGGTCTGACATTCTCCAACGAGCTCATCTCCCGCGACGAGGGTATGCATACTGA-TTTCG 234632
Query 125573 CATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT 125632
||| | ||| | | || ||| || | | | | ||||| | || |||
Sbjct 234631 CATGC--CTG---CTCTTCTCTCT---TCTCAACAACCGCCCCAGCAAGGAGTCTGTCCA 234580
Query 125633 CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT 125692
||| | || || || || | || || |||||||| | | ||| | || || |
Sbjct 234579 GGCCATCATCACTGAGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCT-CCCCT 234521
Query 125693 CAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATC 125751
||| | |||| |||||| || || |||||| ||||||| ||||| || || ||||
Sbjct 234520 GCGCACTTCTTGGTATGAACGCCACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATC 234461
Query 125752 GTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811
| || |||| | | | |||| | ||||| |||| || ||||| || ||||
Sbjct 234460 GCCTGCTGTTGGCTCTCGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCA 234401
Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|| | ||| || |||| || ||||||||||| |||||||||
Sbjct 234400 TGGAGAACATCTCGCTAGCTGGCAAGACCAACTTCTTCGAGAAG 234357
>seq17
Length=926260
Score = 116 bits (128), Expect = 5e-21
Identities = 330/499 (66%), Gaps = 6/499 (1%)
Strand=Plus/Minus
Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921
|||| |||||| ||||| ||||| || || || || || | ||| |||| | || |
Sbjct 107038 CACGTTACGTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGC 106979
Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981
| |||||||| || || || | ||| | || ||||||| ||| ||| |||||||
Sbjct 106978 CATGGCACGCCGATGTCTTCGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGG 106919
Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041
|| || | || | || || || | ||| | || ||| | |||||||||||||||
Sbjct 106918 TCCGCGCTCGTGATCTCTTCTACGCTTTGTGGATCCCCGATCTCTTCATGAAGCGCGTCC 106859
Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101
| || ||| | |||| || | || ||| | | | || ||||| ||||| |
Sbjct 106858 AAGAGAATGGTGAATGGACGCTGTTCTGTCCCAATGAGGCTCCTGGTCTTGCCGATGTTT 106799
Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTA-CACGGCCTACGAGCAAGAGGGCCG-ATACGTGAG 97159
|| || ||||| |||| || ||| | ||||||| | ||| || |||||
Sbjct 106798 ACGGTGATGAGTTCGAGGAGCTCTACCACCG-CTACGAGAAGGAGAATCGTGGTCGTGAA 106740
Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218
|| ||| ||| | |||| || ||| | ||||| | ||| ||| |||||||| |
Sbjct 106739 AC-CGTCCGTGC-CCAGAAGCTTTGGTATGCCATTCTCGAGGCGCAGACCGAGACTGGTA 106682
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| ||||||||||| || || | || |||||||| || |||| |
Sbjct 106681 ACCCTTTCATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGTA 106622
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338
| ||| ||||||| || ||||| || || | |||||| | |||| |||||| ||
Sbjct 106621 CTATCCGAAGCTCCAACCTCTGCACTGAGATCATCGAGTACACTGCTCCTGACGAGGTGG 106562
Query 97339 CAGTTTGCGTTCTGGCATC 97357
| || ||| ||| || ||
Sbjct 106561 CTGTCTGCAATCTTGCTTC 106543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058560836440
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