Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17 140 4e-28 seq18 96.9 4e-15 >seq17 Length=926260 Score = 140 bits (154), Expect = 4e-28 Identities = 315/473 (67%), Gaps = 3/473 (1%) Strand=Plus/Plus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||||| |||||||| || ||||| || |||| | ||||| || |||||||| Sbjct 105619 TCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTACATG 105678 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 ||||| || ||||| || |||| || ||| ||||| ||| | ||| | | Sbjct 105679 CCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCATAGTA 105738 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 || || || ||||| || | ||| ||| |||||||||||||| || | ||| ||| Sbjct 105739 GGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 105798 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 ||||| | ||||| || || | |||||||||| ||| || |||| ||| | Sbjct 105799 GCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCTTGGTC 105858 Query 62223 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 ||||| |||| ||| | | | || ||||| ||||| ||||| || || | |||||| Sbjct 105859 TCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGATTCTTC 105918 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || | ||| ||| | | ||| | | | |||| || || || || ||| Sbjct 105919 ATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGACGACT 105978 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || || || |||| | || | || | ||| || || || || || || | || Sbjct 105979 TGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAAAGCAC 106038 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62452 || || ||||| | || |||| || |||||||| ||||| ||||| | ||| Sbjct 106039 TCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAA 106091 Score = 125 bits (138), Expect = 9e-24 Identities = 400/612 (65%), Gaps = 14/612 (2%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| || || |||||| | | | |||||| |||| ||||| | || || | Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || || | || | || || ||||| |||||||| || ||||| | ||| || Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | || || || || ||||| | || ||||| | | Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | ||| | ||||| || || | || ||||| | | || || || ||||| || ||| Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | ||| | || ||||| || || || | | ||| ||||| | ||| || || Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGAC 63495 | || ||||| || ||| ||| || ||||||| ||| | | |||| | | Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | || || || || | || ||||| || || || || | ||||| |||||||| | Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGT 63613 | ||||| || || |||||| || || || ||| ||||| || | || | ||| Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGG--AGT 107258 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGT 63672 || || || || | || || || ||||| ||||| | || | || | |||| | || Sbjct 107259 GCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGT 107317 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAA 63730 |||||||||| || || || || |||| ||||| || || ||||||||||| | Sbjct 107318 ACGTCTCAATGGCCTTCTCGATGTC--ATTGCCGTGAATGCCGACAGCGACACGCATCAG 107375 Query 63731 CATGTGCTGAGG 63742 |||||| || || Sbjct 107376 CATGTGTTGTGG 107387 >seq18 Length=888533 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||||||||| |||| ||||||||| | || || |||||||| || || || Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || |||||||| ||||| || || || || |||||| Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747 Query 33424 ATTCCTTCTACTGCAGCAAAGGC 33446 || || || || |||||||| || Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946662708040