Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq17 140 4e-28
seq18 96.9 4e-15
>seq17
Length=926260
Score = 140 bits (154), Expect = 4e-28
Identities = 315/473 (67%), Gaps = 3/473 (1%)
Strand=Plus/Plus
Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042
|||| ||||| |||||||| || ||||| || |||| | ||||| || ||||||||
Sbjct 105619 TCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTACATG 105678
Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102
||||| || ||||| || |||| || ||| ||||| ||| | ||| | |
Sbjct 105679 CCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCATAGTA 105738
Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162
|| || || ||||| || | ||| ||| |||||||||||||| || | ||| |||
Sbjct 105739 GGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 105798
Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222
||||| | ||||| || || | |||||||||| ||| || |||| ||| |
Sbjct 105799 GCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCTTGGTC 105858
Query 62223 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279
||||| |||| ||| | | | || ||||| ||||| ||||| || || | ||||||
Sbjct 105859 TCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGATTCTTC 105918
Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339
|| | ||| ||| | | ||| | | | |||| || || || || |||
Sbjct 105919 ATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGACGACT 105978
Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399
|| || || |||| | || | || | ||| || || || || || || | ||
Sbjct 105979 TGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAAAGCAC 106038
Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62452
|| || ||||| | || |||| || |||||||| ||||| ||||| | |||
Sbjct 106039 TCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAA 106091
Score = 125 bits (138), Expect = 9e-24
Identities = 400/612 (65%), Gaps = 14/612 (2%)
Strand=Plus/Plus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|||||||| || || |||||| | | | |||||| |||| ||||| | || || |
Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|| || || | || | || || ||||| |||||||| || ||||| | ||| ||
Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
||||| | | | || || || || ||||| | || ||||| | |
Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962
Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377
| ||| | ||||| || || | || ||||| | | || || || ||||| || |||
Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022
Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437
|| || | ||| | || ||||| || || || | | ||| ||||| | ||| || ||
Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082
Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGAC 63495
| || ||||| || ||| ||| || ||||||| ||| | | |||| | |
Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140
Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555
| || || || || | || ||||| || || || || | ||||| |||||||| |
Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200
Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGT 63613
| ||||| || || |||||| || || || ||| ||||| || | || | |||
Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGG--AGT 107258
Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGT 63672
|| || || || | || || || ||||| ||||| | || | || | |||| | ||
Sbjct 107259 GCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGT 107317
Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAA 63730
|||||||||| || || || || |||| ||||| || || ||||||||||| |
Sbjct 107318 ACGTCTCAATGGCCTTCTCGATGTC--ATTGCCGTGAATGCCGACAGCGACACGCATCAG 107375
Query 63731 CATGTGCTGAGG 63742
|||||| || ||
Sbjct 107376 CATGTGTTGTGG 107387
>seq18
Length=888533
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
||||||||||| |||| ||||||||| | || || |||||||| || || ||
Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || |||||||| || |||||||| ||||| || || || || ||||||
Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747
Query 33424 ATTCCTTCTACTGCAGCAAAGGC 33446
|| || || || |||||||| ||
Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946662708040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |