Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq17 297 5e-75 seq4 86.0 2e-11 seq18 84.2 6e-11 >seq17 Length=926260 Score = 297 bits (328), Expect = 5e-75 Identities = 1060/1636 (65%), Gaps = 46/1636 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || |||||| |||| || | | ||| || || |||| || |||||||| || Sbjct 107294 TTTACACACGCCTCGCCGACGCTCTTCAACGCAGGCACTCCATCCCCTCAGATGTCCTCC 107235 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||| || || ||| || ||||||| |||||||| |||| Sbjct 107234 TGCTTCCTCATTGACATGAAAGAGGACAGCATTGACGGTATCTACGACACACTGAAGACC 107175 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| ||| ||||| ||||| | | || | || | | ||||| Sbjct 107174 TGTGCCTTGATCTCCAAGACTGCTGGCGGTATTGGCCTCAACG-TGCATCGTATCCGTGC 107116 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 |||| | ||||| | ||||| ||| |||||||| || |||| ||||| | Sbjct 107115 CACAGG-CTCCTACATCGGTGGCACCAACGGAACTTCGAATGGTCTCATTCCTATGCTCC 107057 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| | |||| || || | ||||| ||||||||||| ||||| || || | Sbjct 107056 GTGTCTACAACAACACAGCACGTTACGTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCT 106997 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || ||||| ||||| || |||||| | || | || ||||| | || || | Sbjct 106996 TTGCCATCTATCTTGAGCCATGGCACGCCGATGTCTTCGGCTTCCTTGACTTGCGCAAGA 106937 Query 363905 AC-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 || |||| || |||||| | || || |||||||| ||||| || | ||| | | | Sbjct 106936 ACCACGGCAAGGAAGAGG---TCCGCGCTCGTGATCTCTTCTACGCTTTGTGGATCCCCG 106880 Query 363962 ACCATTTTATGAAGCGCGT---GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACG 364018 | | || ||||||||||| ||| ||| ||| ||| | || || || || | | Sbjct 106879 ATCTCTTCATGAAGCGCGTCCAAGAGAATGGT--GAA-TGGACGCTGTTCTGTCCCAATG 106823 Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTA-------TACG 364069 | ||| |||||| ||||||| | ||||| || | | |||||| |||| Sbjct 106822 AGGCTCCTGGTCTTGCCGATGTTTACGGTGATGAGTTCGAGGAGCTCTACCACCGCTACG 106763 Query 364070 AAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTG 364129 | ||| | |||||| | |||| | || | | || |||||||| |||| || Sbjct 106762 AGAAGGA-GAATCG--------TGGTCGTGAAACCGTCCGTGCCCAGAAGCTTTGGTATG 106712 Query 364130 CCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGC 364188 |||| | || |||||| ||||| || | ||||| | ||| | ||||| || | ||| Sbjct 106711 CCATTCTCGAGGCGCAGACCGAGACTGGTA-ACCCTTTCATGCTCTACAAGGACGCCTGC 106653 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGA 364247 ||| | ||| ||||||| || |||| ||||| | || | || |||||| || || || Sbjct 106652 AACAGGAAGAGCAACCAGAAGAACCTGGGTACTA-TCCGAAGCTCCAACCTCTGCACTGA 106594 Query 364248 GATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||| || || ||||| ||||| |||||| || || || || ||||| || | || || Sbjct 106593 GATCATCGAGTACACTGCTCCTGACGAGGTGGCTGTCTGCAATCTTGCTTCCCTTGCTCT 106534 Query 364308 TCCGGCGTTTG-----TAAAAG-ATGGTACTTTTGACCACCAGCATCTTTATGACGTAAC 364361 || | |||| || ||| ||| || ||| ||| | ||| | || || || Sbjct 106533 CCCATCCTTTGTTGATTACAAGCGTGGCGAGTTCGACTTCCAAAAGCTTCACGAGGTCAC 106474 Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421 | | || ||| ||||| | ||||| | ||||| || | || ||| | || Sbjct 106473 CCAGGTTGTCACTCGCAATTTGAACAAGATCATCGAGGTCAACCACTACCCAGTCGAGGA 106414 Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 || || || | || || | || ||||| | ||||| || || || ||||| Sbjct 106413 GGCACGTCGCAGCAACTTCCGCCACAGGCCTATTGGCATGGGTGTCCAAGGTCTTGCTGA 106354 Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541 | ||| || || || | || || ||||| || || || || | | Sbjct 106353 TGCTTTCCTGGCTCTGCGCTTGCCCTTCGAGTCGCCAGAGGCCAAGAAGCTCAACATCCA 106294 Query 364542 GATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGA-TTTGGCAAAAACCA 364600 |||||| ||||| || || ||||| | ||| | || ||||| | | ||| | | Sbjct 106293 GATCTTCGAAACCATCTACCACGCCGCCCTCACTTCATCTTGTGACATCGCCAAGGAACT 106234 Query 364601 AGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATC 364660 || | ||| || || ||||| || || | || ||||| | | |||| || Sbjct 106233 CGGCCCA-TACCAGACCTACGAGGGTTCGCCAGTGTCTCAGGGTATTCTTCAGTACGACA 106175 Query 364661 TATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGA 364720 | |||||||| || || ||| | ||| |||||| | || || || Sbjct 106174 TGTGGAATGTGACTCCTACTGATCTGTGGGACTGGGCCTCCCTGAAGGAGAAGATTGCTC 106115 Query 364721 AGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGA 364780 |||||||| ||||||||| || | | || |||||||| || || ||||| | |||| Sbjct 106114 AGCATGGTGTTCGCAACTCTCTTTTGATTGCACCCATGCCAACTGCATCTACCTCTCAGA 106055 Query 364781 TCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTC 364840 |||||||||||||||||||||| || || | ||| || | || || ||||| || | Sbjct 106054 TCCTCGGAAACAACGAGTGCTTTGAGCCATACACATCGAACATCTACTCCCGCCGTGTGC 105995 Query 364841 TTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGC 364900 | | || || || | || || || | || | |||||||| ||| || | Sbjct 105994 TCGCTGGTGAGTTCCAAGTCGTCAACCCATGGCTGCTTAAGGATCTGGTCGATATGGGTC 105935 Query 364901 TGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC 364960 ||||| ||| | ||||||||| |||||| || | ||| || | || ||||| Sbjct 105934 TGTGGTCTGAGAACATGAAGAATCGTATCATTGCAGAAGGTGGCTCCATCCAACGCATTC 105875 Query 364961 CAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA 365020 | |||| ||||| ||| || ||||||| || || |||||||| || ||||| Sbjct 105874 CCAACATTCCTGAAGAGACCAAGACTCTTTACAAGACTGTTTGGGAAATCTCTCAGCGAA 105815 Query 365021 CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACG 365080 | |||| | ||||| || || || ||||| || ||| |||| ||||| | ||| Sbjct 105814 CCATCATCCAGATGGCTGCTGACCGTGGTGCCTTCATCGATCAGTCTCAGTCTCTCAACA 105755 Query 365081 TATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAAT 365140 | ||||| |||| || | |||| | || || ||||| || || ||||| Sbjct 105754 TCCACATGAAGGAGCCTACTATGGGCAAGATCACGTCGATGCACTTTGCTGGTTGGAAGC 105695 Query 365141 CCGGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 105694 TTGGTCTCAAGACGGG 105679 >seq4 Length=2048726 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 65872 TTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGC 65931 || |||| ||||||||||| || ||| ||||||| ||||| || | || |||| Sbjct 1808287 TTTCGAACGGTTCCGTCATATTTTACCATGACATCTTCAAGCGCCTTGACCAAACGACGC 1808346 Query 65932 TGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGAC 65991 |||||||| ||| | | ||||| || || |||||||| | |||||| ||||| || | | Sbjct 1808347 TGGATGTATCCAGTCTCGGCAGTCTTCACGGCGGTATCGATGAGACCCTCACGACCAGCC 1808406 Query 65992 ATTGCAGAAAAGAAAAACTC 66011 || || ||||| ||||| Sbjct 1808407 ATGGCGTGGAAGAAGAACTC 1808426 >seq18 Length=888533 Score = 84.2 bits (92), Expect = 6e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTT-CATTCGCGGAACG 22493 || ||||| |||||||| || |||||| |||| |||| | | ||||| | || Sbjct 234836 AAGAAGGCTGATTGGGCCCTTCGATGGATCTCTGACAA-GAACTCTACTTTCGCCAACCG 234778 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 ||| | |||||||||| || || ||||| ||||| || | ||| | ||||| Sbjct 234777 TCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTTTGCGTCCATCTT 234718 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||||| || || |||| | ||||| ||||| || || || || ||| | || ||| Sbjct 234717 TTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAACGAGCTCATCTCCCG 234658 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 || |||||| | ||||| ||||| || || |||| Sbjct 234657 CGACGAGGGTATGCATACTGATTTCGCATGCCTGCT 234622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352447753958